Browse Element(s) Details


OsAffx.28169.1.S1_at

Description tigr:9634.m04712
TID=OsAffx.28169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATPase, AAA family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4825011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48210OsAffx.28166.1.S1_at11/116+29162810..29165835ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48210OsAffx.28166.1.S1_s_at11/116+29162810..29165835ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48220NANA6+29170336..29171172hypothetical protein
LOC_Os06g48230Os.52719.1.S1_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230Os.8227.1.A1_s_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48240OsAffx.28169.2.S1_at11/116+29179298..29180824ATPase, AAA family protein, expressed
LOC_Os06g48240OsAffx.25760.1.S1_x_at1/116+29179298..29180824ATPase, AAA family protein, expressed
LOC_Os06g48250OsAffx.28169.1.S1_at11/116+29183400..29185123ATPase, AAA family protein, expressed
LOC_Os06g48260NANA6+29186079..29186282hypothetical protein
LOC_Os06g48270OsAffx.29680.1.S1_at4/116+29188145..29190042hypothetical protein
LOC_Os06g48280OsAffx.28171.1.S1_at11/116+29192775..29193968hypothetical protein
LOC_Os06g48280OsAffx.24197.1.S1_x_at1/116+29192775..29193968hypothetical protein
LOC_Os06g48290OsAffx.15983.1.S1_at10/116+29197272..29198358Homeobox domain containing protein
LOC_Os06g48300Os.39552.1.A1_s_at11/116+29207091..29209949Protein phosphatase 2C containing protein, expressed
LOC_Os06g48300Os.34372.1.S1_at10/116+29207091..29209949Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28169.1.S1_at--582--551Chr06:29183796..29183820 (25 bp)
ATCCGGACACGGTGAGCGGCCTCAT
LOC_Os06g48250
OsAffx.28169.1.S1_at--28--1831Chr06:29183634..29183658 (25 bp)
ACGCGCCGGCGGTGCCTGTCACAGA
LOC_Os06g48250
OsAffx.28169.1.S1_at--687--4691Chr06:29183605..29183629 (25 bp)
GCGGCCATGACGACAGAGTAAAAAG
LOC_Os06g48250
OsAffx.28169.1.S1_at--468--7051Chr06:29183588..29183612 (25 bp)
GTAAAAAGCAGACGAGCCGCCATTG
LOC_Os06g48250
OsAffx.28169.1.S1_at--246--4091Chr06:29183576..29183600 (25 bp)
CGAGCCGCCATTGCGGATTGCTTGA
LOC_Os06g48250
OsAffx.28169.1.S1_at--526--10331Chr06:29183514..29183538 (25 bp)
TTTCATGGTGATTTGGTTTCGAGTT
LOC_Os06g48250
OsAffx.28169.1.S1_at--928--3131Chr06:29183482..29183506 (25 bp)
AATTAGGTCGGTTGTGATCGTGTCA
LOC_Os06g48250
OsAffx.28169.1.S1_at--546--10831Chr06:29183471..29183495 (25 bp)
TTGTGATCGTGTCATGGTTGCGCCA
LOC_Os06g48250
OsAffx.28169.1.S1_at--191--511Chr06:29183466..29183490 (25 bp)
ATCGTGTCATGGTTGCGCCATGGAT
LOC_Os06g48250
OsAffx.28169.1.S1_at--352--211Chr06:29183436..29183460 (25 bp)
ATTTGAGGATTTGCTGCATTTTGCA
LOC_Os06g48250
OsAffx.28169.1.S1_at--533--10271Chr06:29183417..29183441 (25 bp)
TTTGCAATGGTGTGTGGCTTTCTGA
LOC_Os06g48250
Target Sequence 
ATCCGGACACGGTGAGCGGCCTCATGGCCGACGCCGAGGGCCTCCTCGCAGCCGGGGTGCTCATCACGCCCGCCGACATC
GCCGAGGTGTTCATGGGCTGCGACGGCGCGGGCGCCACCGCCGCGCTGAGGAAGCTCGCCGACGAGCTGCGGCGGAGGAG
GGACGCGCCGGCGGTGCCTGTCACAGAGGAGGCGGCCATGACGACAGAGTAAAAAGCAGACGAGCCGCCATTGCGGATTG
CTTGAACTTGAACAGCATCATGATCAATATATAATTAATAATTTTCATGGTGATTTGGTTTCGAGTTAGGTATTAATTAG
GTCGGTTGTGATCGTGTCATGGTTGCGCCATGGATGGAGGATTTGAGGATTTGCTGCATTTTGCAATGGTGTGTGGCTTT
CTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis