Browse Element(s) Details


Os.52719.1.S1_at

Description gb:AK068912.1
DB_XREF= gi:32978937
TID=Os.52719.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001I09, full insert sequence.
FL= gb:AK068912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4823011/11RNA polymerase Rpb8 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48190OsAffx.27931.1.S1_at11/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.5700.1.S1_x_at1/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.27931.2.S1_x_at1/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.27931.2.S1_at1/116+29146381..29147624expressed protein
LOC_Os06g48200Os.22839.1.S2_at11/116+29155430..29156885xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200Os.22839.1.S1_at11/116+29155430..29156885xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48210OsAffx.28166.1.S1_at11/116+29162810..29165835ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48210OsAffx.28166.1.S1_s_at11/116+29162810..29165835ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48220NANA6+29170336..29171172hypothetical protein
LOC_Os06g48230Os.52719.1.S1_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230Os.8227.1.A1_s_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48240OsAffx.28169.2.S1_at11/116+29179298..29180824ATPase, AAA family protein, expressed
LOC_Os06g48240OsAffx.25760.1.S1_x_at1/116+29179298..29180824ATPase, AAA family protein, expressed
LOC_Os06g48250OsAffx.28169.1.S1_at11/116+29183400..29185123ATPase, AAA family protein, expressed
LOC_Os06g48260NANA6+29186079..29186282hypothetical protein
LOC_Os06g48270OsAffx.29680.1.S1_at4/116+29188145..29190042hypothetical protein
LOC_Os06g48280OsAffx.28171.1.S1_at11/116+29192775..29193968hypothetical protein
LOC_Os06g48280OsAffx.24197.1.S1_x_at1/116+29192775..29193968hypothetical protein
LOC_Os06g48290OsAffx.15983.1.S1_at10/116+29197272..29198358Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52719.1.S1_at--969--9351Chr06:29172813..29172837 (25 bp)
TCGAACAGTTCATATGCATCCCATT
LOC_Os06g48230
Os.52719.1.S1_at--18--651Chr06:29172800..29172824 (25 bp)
ATGCATCCCATTGCTGTCTGTACTG
LOC_Os06g48230
Os.52719.1.S1_at--66--7191Chr06:29172785..29172809 (25 bp)
GTCTGTACTGTTTCAGCTACTTGGT
LOC_Os06g48230
Os.52719.1.S1_at--683--3371Chr06:29172772..29172796 (25 bp)
CAGCTACTTGGTTAATTCAATTCAA
LOC_Os06g48230
Os.52719.1.S1_at--969--171Chr06:29172674..29172698 (25 bp)
ATTTTTCGCCTTGCCAATATGTAAA
LOC_Os06g48230
Os.52719.1.S1_at--118--7051Chr06:29172654..29172678 (25 bp)
GTAAATCTGGCCTACAGCTACACAG
LOC_Os06g48230
Os.52719.1.S1_at--100--2151Chr06:29172641..29172665 (25 bp)
ACAGCTACACAGCTTGTACTAGACT
LOC_Os06g48230
Os.52719.1.S1_at--829--7011Chr06:29172626..29172650 (25 bp)
GTACTAGACTACTGTTAGTCCTGTA
LOC_Os06g48230
Os.52719.1.S1_at--1065--6771Chr06:29172613..29172637 (25 bp)
GTTAGTCCTGTATCAAGTTTATTTT
LOC_Os06g48230
Os.52719.1.S1_at--1158--10311Chr06:29172590..29172614 (25 bp)
TTTAACGTAATCCTGTATCATGTGA
LOC_Os06g48230
Os.52719.1.S1_at--1020--3151Chr06:29172530..29172554 (25 bp)
AATTGCATTCTTTTCCATTCTAGGG
LOC_Os06g48230
Target Sequence 
TCGAACAGTTCATATGCATCCCATTGCTGTCTGTACTGTTTCAGCTACTTGGTTAATTCAATTCAAGTGCATTTACTTAA
TTAATTGTATCATTGTTATGTGAATCATGTTATACGAAGATAAGTACCTTCAAAGAACAATTTTTCGCCTTGCCAATATG
TAAATCTGGCCTACAGCTACACAGCTTGTACTAGACTACTGTTAGTCCTGTATCAAGTTTATTTTTAACGTAATCCTGTA
TCATGTGATGATGTCAACTCCCTTTGTGCTATGAATTTTAATGAATTGCATTCTTTTCCATTCTAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis