Browse Element(s) Details


OsAffx.5700.1.S1_x_at

Description tigr:9636.m00373
TID=OsAffx.5700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0448011/11hypothetical protein
LOC_Os06g481901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04480OsAffx.5700.1.S1_x_at11/118+2197103..2197961hypothetical protein
LOC_Os08g04490OsAffx.5701.1.S1_at11/118+2198769..2203345hypothetical protein
LOC_Os08g04500Os.57569.2.A1_s_at11/118+2203682..2207548Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g04510OsAffx.22848.3.S1_x_at3/118+2212585..2218544retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5700.1.S1_x_at--423--871Chr08:2197760..2197784 (25 bp)
ATGGCGGTGGCACCTGGGCTCAGCA
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--942--4671Chr08:2197757..2197781 (25 bp)
GCGGTGGCACCTGGGCTCAGCAGCG
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--875--8491Chr08:2197753..2197777 (25 bp)
TGGCACCTGGGCTCAGCAGCGGCGA
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--1111--1951Chr08:2197432..2197667 (25 bp)
ACTGTCGCCATCGTTAATGCTGCTA
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--520--3012Chr08:2197417..2197441 (25 bp)
AATGCTGCTAATGAACGAATGCTAG
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--712--8873Chr06:20093042..20093388 (25 bp)
TGATGGAGCTATACATCGAGCTGCT
NONE
OsAffx.5700.1.S1_x_at--567--3851Chr08:2197266..2197290 (25 bp)
CTGAACTCGTAGAGCCCTGCCCAGT
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--717--10031Chr08:2197257..2197281 (25 bp)
TAGAGCCCTGCCCAGTCCAGAGACG
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--1083--1651Chr08:2197254..2197278 (25 bp)
AGCCCTGCCCAGTCCAGAGACGCGG
LOC_Os08g04480
OsAffx.5700.1.S1_x_at--857--7573Chr06:29147473..29147492 (20 bp)
GGGCTGGCAGATTCTCCTACGCCGA
LOC_Os06g48190
OsAffx.5700.1.S1_x_at--342--8272Chr08:2197225..2197249 (25 bp)
GGCAGATTCTCCTACGCCGACGAGC
LOC_Os08g04480
Target Sequence 
ATGGCGGTGGCACCTGGGCTCAGCAGCGGCGAGGCGTTCCGGCTGTCGGCGGATGCGGGCGCGGGCGCACTCAAGCTGCA
CAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACTGTCGCCATCGTTAATGCTGCTAATGAACGAATGCTAGGAG
GTGGAGGTGTTGATGGAGCTATACATCGAGCTGCTGGACCTGAACTCGTAGAGCCCTGCCCAGTCCAGAGACGCGGGGCT
GGCAGATTCTCCTACGCCGACGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5700.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis