Browse Element(s) Details


Os.9162.1.S1_at

Description gb:AK070351.1
DB_XREF= gi:32980375
TID=Os.9162.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054M12, full insert sequence.
FL= gb:AK070351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0446011/11NADPH-dependent FMN reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04480OsAffx.5700.1.S1_x_at11/118+2197103..2197961hypothetical protein
LOC_Os08g04490OsAffx.5701.1.S1_at11/118+2198769..2203345hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009733biological_processresponse to auxin stimulus
GO:0010181molecular_functionFMN binding
GO:0016655molecular_functionoxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9162.1.S1_at--400--3131Chr08:2177156..2177180 (25 bp)
AATTTTCTACTCTACTGGTTCCCAG
LOC_Os08g04460
Os.9162.1.S1_at--161--7711Chr08:2177131..2177152 (22 bp)
GGTGGCCAAGAAACTACTCCGTTGA
LOC_Os08g04460
Os.9162.1.S1_at--965--8271Chr08:2176863..2176887 (25 bp)
GGCATGATCTTTGTTCCAGTAGGGT
LOC_Os08g04460
Os.9162.1.S1_at--993--8991Chr08:2176849..2176873 (25 bp)
TCCAGTAGGGTACACCTTTGGTGCT
LOC_Os08g04460
Os.9162.1.S1_at--740--3911Chr08:2176778..2176802 (25 bp)
CTGGCACATTCGCTGGTGATGGATC
LOC_Os08g04460
Os.9162.1.S1_at--218--2891Chr08:2176753..2176777 (25 bp)
AAGGGTTGCCACTGAGCTTGAGCTG
LOC_Os08g04460
Os.9162.1.S1_at--328--2891Chr08:2176677..2176701 (25 bp)
AAGGGTTCCGCATGATCACCTAGAC
LOC_Os08g04460
Os.9162.1.S1_at--975--10311Chr08:2176589..2176613 (25 bp)
TTTACCTCAGAGTGCCATTGGAATG
LOC_Os08g04460
Os.9162.1.S1_at--164--6651Chr08:2176556..2176580 (25 bp)
GTTGTTGCCCAATACTTTGCCATGA
LOC_Os08g04460
Os.9162.1.S1_at--348--271Chr08:2176530..2176554 (25 bp)
ATATGTGATCCCATACCTTTTCCTG
LOC_Os08g04460
Os.9162.1.S1_at--51--8671Chr08:2176469..2176493 (25 bp)
TGTGGACATGCTCTATTTCTTCTAT
LOC_Os08g04460
Target Sequence 
AATTTTCTACTCTACTGGTTCCCAGGGTGGTGGCCAAGAAACTACTCCGTTGACAGCAATTACTCAGCTAGTGCATCATG
GCATGATCTTTGTTCCAGTAGGGTACACCTTTGGTGCTGGGATGTTTGAGATGGAGCAAGTGAAGGGCGGAAGCCCGTAC
GGGTCTGGCACATTCGCTGGTGATGGATCAAGGGTTGCCACTGAGCTTGAGCTGCAACAAGCCTTCCACCAAGGGAAGTA
CTTTGCTGGAATTGCGAAGAAACTCAAGGGTTCCGCATGATCACCTAGACAATGTTTGAGTCTGATCATCCATATGGAAT
AAAGTTTCAGCTCTAAAGTTGATAGTTTGTTATTTTACCTCAGAGTGCCATTGGAATGTAATTTGGGTTGTTGCCCAATA
CTTTGCCATGATATATGTGATCCCATACCTTTTCCTGCTTTACTGCTTTCTAGCATGAAACATGCTGGCATCATGTGGAC
ATGCTCTATTTCTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis