Browse Element(s) Details


Os.50227.1.S1_at

Description gb:AK120206.1
DB_XREF= gi:37989829
TID=Os.50227.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038B04, full insert sequence.
FL= gb:AK120206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g044108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04350NANA8+2127337..2127962Plastocyanin-like domain containing protein, expressed
LOC_Os08g04360OsAffx.29025.1.S1_at11/118+2131189..2131737Plastocyanin-like domain containing protein, expressed
LOC_Os08g04370OsAffx.29026.1.S1_at11/118+2134038..2134610Plastocyanin-like domain containing protein
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50227.1.S1_at--754--6771NONE
GTTACTGCTGACATACTAGGACTTC
NONE
Os.50227.1.S1_at--335--3651Chr08:2151566..2151590 (25 bp)
CTTCAGGCTCAGATTGCTCAAAACA
LOC_Os08g04410
Os.50227.1.S1_at--139--2331Chr08:2151939..2151963 (25 bp)
AAAGTATACCAGTTGGGCCTCGCGG
LOC_Os08g04410
Os.50227.1.S1_at--445--1091Chr08:2151992..2152016 (25 bp)
AGTGGCTAACTTTCTCGGAGGCTGT
LOC_Os08g04410
Os.50227.1.S1_at--73--10551Chr08:2152041..2152065 (25 bp)
TTCATCCGGGCTTCCATCAAGAGGA
LOC_Os08g04410
Os.50227.1.S1_at--636--5411Chr08:2152064..2152088 (25 bp)
GAAGCTGGCAGCGACTCTGATAGTC
LOC_Os08g04410
Os.50227.1.S1_at--558--4911Chr08:2152302..2152326 (25 bp)
GCTTGCTCTTATTGCCGGATTCTCG
LOC_Os08g04410
Os.50227.1.S1_at--742--2951Chr08:2152385..2152409 (25 bp)
AAGGCCATACCCTGGATCTCGGAGG
LOC_Os08g04410
Os.50227.1.S1_at--44--8011Chr08:2152405..2152429 (25 bp)
GGAGGGATCCTGTGCTTCGTCCATG
LOC_Os08g04410
Os.50227.1.S1_at--127--4771Chr08:2152465..2152489 (25 bp)
GCTGCAGCATACGAACTTCCTTAGA
NONE
Os.50227.1.S1_at--647--10171Chr08:2152517..2152541 (25 bp)
TATCACACACGAGATCATCACCTGA
NONE
Target Sequence 
GTTACTGCTGACATACTAGGACTTCAGGCTCAGATTGCTCAAAACAAGGTTAAAACGGTGAGGATGTTGTTCATCGAATG
TGAGCAATCATCCTCCAAAGTATACCAGTTGGGCCTCGCGGCTGCAGTGCTCCTTGTAGCTGCCCACGCAGTGGCTAACT
TTCTCGGAGGCTGTGCCTGCATCTGCTCTCAGATGGAGTTCATCCGGGCTTCCATCAAGAGGAAGCTGGCAGCGACTCTG
ATAGTCCTCTCCTGGCTTGCTCTTATTGCCGGATTCTCGCTGCTGCTCGCCGGTGCCATGCGCAACTCCAACCCCCGGAG
AAATTGCAGCTTTGCGCAAGGCCATACCCTGGATCTCGGAGGGATCCTGTGCTTCGTCCATGCCGGGGTCACCGTCGCCT
ACTACGTCACCGCCAACGCTGCAGCATACGAACTTCCTTAGAGATCATGCTACGAGCAAGCTGATACTTTATCACACACG
AGATCATCACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis