Browse Element(s) Details


Os.9748.1.S1_at

Description gb:AK070704.1
DB_XREF= gi:32980728
TID=Os.9748.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056N10, full insert sequence.
FL= gb:AK070704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0444010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9748.1.S1_at--247--1731Chr08:2167358..2167382 (25 bp)
ACCTTTGCTAATAATGACCCCCATG
LOC_Os08g04440
Os.9748.1.S1_at--119--771Chr08:2167336..2167360 (25 bp)
ATGTCTTGCTTGTCCTGACTCATGA
LOC_Os08g04440
Os.9748.1.S1_at--980--3611Chr08:2167328..2167352 (25 bp)
CTTGTCCTGACTCATGAGGTGCTGG
LOC_Os08g04440
Os.9748.1.S1_at--392--7311Chr08:2167310..2167334 (25 bp)
GTGCTGGTTGTGTTGGAGTCACCCT
LOC_Os08g04440
Os.9748.1.S1_at--14--6631Chr08:2167299..2167323 (25 bp)
GTTGGAGTCACCCTTTCATTTGAAT
LOC_Os08g04440
Os.9748.1.S1_at--908--9571Chr08:2167284..2167308 (25 bp)
TCATTTGAATTGTCGTAGCCCTTAT
LOC_Os08g04440
Os.9748.1.S1_at--627--9991Chr08:2167269..2167293 (25 bp)
TAGCCCTTATCAGCTGGTGGCATGT
LOC_Os08g04440
Os.9748.1.S1_at--584--8751Chr08:2167236..2167260 (25 bp)
TGTACTGGATAATGACTCGTTGCTC
LOC_Os08g04440
Os.9748.1.S1_at--378--5711Chr08:2167223..2167247 (25 bp)
GACTCGTTGCTCAGAATAACACGTT
LOC_Os08g04440
Os.9748.1.S1_at--190--351Chr08:2167208..2167232 (25 bp)
ATAACACGTTTATACATGACAAGGT
LOC_Os08g04440
Os.9748.1.S1_at--148--5611Chr08:2167191..2167215 (25 bp)
GACAAGGTACAACTGAATTTTCCTT
NONE
Target Sequence 
ACCTTTGCTAATAATGACCCCCATGTCTTGCTTGTCCTGACTCATGAGGTGCTGGTTGTGTTGGAGTCACCCTTTCATTT
GAATTGTCGTAGCCCTTATCAGCTGGTGGCATGTGCTGCTCATGTACTGGATAATGACTCGTTGCTCAGAATAACACGTT
TATACATGACAAGGTACAACTGAATTTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis