Browse Element(s) Details


Os.9748.2.S1_x_at

Description gb:AK119802.1
DB_XREF= gi:37989425
TID=Os.9748.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D03, full insert sequence.
FL= gb:AK119802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0444010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9748.2.S1_x_at--837--2631NONE
AACCTCTTCATCTCAGGCTTAAGCA
NONE
Os.9748.2.S1_x_at--310--7131Chr08:2169435..2169545 (25 bp)
GTCATACATGCTCGAGTTGTCACAG
LOC_Os08g04440
Os.9748.2.S1_x_at--500--1271Chr08:2169412..2169436 (25 bp)
AGATCGTGTCACTGGATTCTCTAAG
LOC_Os08g04440
Os.9748.2.S1_x_at--185--6871Chr08:2169385..2169409 (25 bp)
GTTTGGCTTCGTAAGGTATGCTACA
LOC_Os08g04440
Os.9748.2.S1_x_at--48--7591Chr08:2167577..2167601 (25 bp)
GGGCTCACAGCGGATCGACAAGTTA
LOC_Os08g04440
Os.9748.2.S1_x_at--721--10151Chr08:2167534..2167558 (25 bp)
TATCGCTATACCATATTGTTCCAGG
LOC_Os08g04440
Os.9748.2.S1_x_at--24--7471Chr08:2167510..2167534 (25 bp)
GTGTGAACAGAGTTTCCGATCCAAT
LOC_Os08g04440
Os.9748.2.S1_x_at--638--8031Chr08:2167471..2167495 (25 bp)
GGAGTGGTCGTTTGCTTGCATCCCA
LOC_Os08g04440
Os.9748.2.S1_x_at--1019--10731Chr08:2167456..2167480 (25 bp)
TTGCATCCCATGGTTTCCGCATGGA
LOC_Os08g04440
Os.9748.2.S1_x_at--482--10211Chr08:2167397..2167421 (25 bp)
TATTACTATCAACGCGCAACAGGAC
LOC_Os08g04440
Os.9748.2.S1_x_at--161--8131Chr08:2167376..2167400 (25 bp)
GGACACGAACAGCTTCAAACCTTTG
LOC_Os08g04440
Target Sequence 
AACCTCTTCATCTCAGGCTTAAGCAAGCGTACAACAACAGATGGGCTTAAAGAAGCTTTTGCAAAGTTTGGGGAAGTCAT
ACATGCTCGAGTTGTCACAGATCGTGTCACTGGATTCTCTAAGGGGTTTGGCTTCGTAAGGTATGCTACAGTTGAGGATG
CAGCTAAAGGAATAGAAGGAATGGATGGAAAGTTTCTCGATGGATGGGTTATTTTTGCTGAATATGCTAGACCCAGAACA
NCACCGCAGCAACCAGAAATGAACTCACAGCCACAACAATCATGGGGCCCTCCATCCAGTTCCTGGGGTGCACAGTAGAT
GAAGATACAATCTTGGGGCCCTCTATCTGGCCGTGGGGCTCACAGCGGATCGACAAGTTATTGATTCTATATTTAGTTTA
TCGCTATACCATATTGTTCCAGGTGTGAACAGAGTTTCCGATCCAATATTCTTATCGTGTTGGAGTGGTCGTTTGCTTGC
ATCCCATGGTTTCCGCATGGAGANGCACTTGTCAAACTGAATATGGACCAAACAATATTACTATCAACGCGCAACAGGAC
ACGAACAGCTTCAAACCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9748.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis