Browse Element(s) Details


Os.18333.1.S1_at

Description gb:AK102951.1
DB_XREF= gi:32988160
TID=Os.18333.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23494 helix-loop-helix-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115D14, full insert sequence.
FL= gb:AK102951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0439011/11bHLH transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04320OsAffx.25936.1.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.7.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.2.S1_x_at4/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.5.S1_x_at1/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04330NANA8+2115691..2118666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04340Os.23207.1.S1_at11/118+2123269..2124255Plastocyanin-like domain containing protein, expressed
LOC_Os08g04350NANA8+2127337..2127962Plastocyanin-like domain containing protein, expressed
LOC_Os08g04360OsAffx.29025.1.S1_at11/118+2131189..2131737Plastocyanin-like domain containing protein, expressed
LOC_Os08g04370OsAffx.29026.1.S1_at11/118+2134038..2134610Plastocyanin-like domain containing protein
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed
LOC_Os08g04410Os.50227.1.S1_at8/118+2151485..2152488hypothetical protein
LOC_Os08g04420OsAffx.16824.1.S1_at11/118+2153170..2156451Protein kinase domain containing protein, expressed
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18333.1.S1_at--618--8851Chr08:2142935..2142959 (25 bp)
TGATGCCTTTTGTTGGATACCCGGG
LOC_Os08g04390
Os.18333.1.S1_at--458--5631Chr08:2142873..2142897 (25 bp)
GACACCTCCAAGGACAGCGAAGCGT
LOC_Os08g04390
Os.18333.1.S1_at--326--4611Chr08:2142837..2142861 (25 bp)
GCGTAATGCTTCATCGGTTGCGTTA
LOC_Os08g04390
Os.18333.1.S1_at--409--5191Chr08:2142805..2142829 (25 bp)
TAATCGTAACCTGAAACCGCTTAGT
LOC_Os08g04390
Os.18333.1.S1_at--479--1791Chr08:2142790..2142814 (25 bp)
ACCGCTTAGTTGCTCAATCCATTGG
LOC_Os08g04390
Os.18333.1.S1_at--811--3031Chr08:2142775..2142799 (25 bp)
AATCCATTGGTTGGGCATCGTCGTC
LOC_Os08g04390
Os.18333.1.S1_at--229--6571Chr08:2142747..2142771 (25 bp)
GATTCACATTCACTATTGTTCTTGT
LOC_Os08g04390
Os.18333.1.S1_at--76--7071Chr08:2142697..2142721 (25 bp)
GTAAGCTGACATTTGTGGCGCTCTA
LOC_Os08g04390
Os.18333.1.S1_at--418--7551Chr08:2142683..2142707 (25 bp)
GTGGCGCTCTATAGAGGCTACTGCC
LOC_Os08g04390
Os.18333.1.S1_at--659--1471Chr08:2142620..2142644 (25 bp)
AGAATGCTCATTCTTGTTCTCTGCA
LOC_Os08g04390
Os.18333.1.S1_at--1040--1731Chr08:2142561..2142585 (25 bp)
ACCATTTCTTATCACCCAAATTCTG
LOC_Os08g04390
Target Sequence 
TGATGCCTTTTGTTGGATACCCGGGGTACCCGATGTGGCAGTTCATGCCGCCTTCCGAAGTCGACACCTCCAAGGACAGC
GAAGCGTGCCCGCCTGTCGCGTAATGCTTCATCGGTTGCGTTATGTGAATTAATCGTAACCTGAAACCGCTTAGTTGCTC
AATCCATTGGTTGGGCATCGTCGTCCCTGATTCACATTCACTATTGTTCTTGTGTTAGTAGTTCGTTTTTGTATGGAAGT
AAGCTGACATTTGTGGCGCTCTATAGAGGCTACTGCCCCCTTTTAATGTACAATACAATTTTTCCGGAGAAAGGAAGAAT
GCTCATTCTTGTTCTCTGCAGACACCCNGTGTCAAATTCAGTAGCATCATATACACCATTTCTTATCACCCAAATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis