Browse Element(s) Details


Os.23207.1.S1_at

Description gb:AK063041.1
DB_XREF= gi:32973059
TID=Os.23207.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D06, full insert sequence.
FL= gb:AK063041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0434011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04300Os.50199.1.S1_at11/118+2101974..2105683fringe protein, putative, expressed
LOC_Os08g04310Os.14191.1.S1_at11/118+2109339..2110694Plastocyanin-like domain containing protein, expressed
LOC_Os08g04320OsAffx.25936.1.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.7.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.2.S1_x_at4/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.5.S1_x_at1/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04330NANA8+2115691..2118666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04340Os.23207.1.S1_at11/118+2123269..2124255Plastocyanin-like domain containing protein, expressed
LOC_Os08g04350NANA8+2127337..2127962Plastocyanin-like domain containing protein, expressed
LOC_Os08g04360OsAffx.29025.1.S1_at11/118+2131189..2131737Plastocyanin-like domain containing protein, expressed
LOC_Os08g04370OsAffx.29026.1.S1_at11/118+2134038..2134610Plastocyanin-like domain containing protein
LOC_Os08g04390Os.18333.1.S1_at11/118+2140185..2145182bHLH transcription factor, putative, expressed
LOC_Os08g04400NANA8+2148255..2150812pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23207.1.S1_at--431--1111Chr08:2123668..2123692 (25 bp)
AGTGTTCAAGTATTCTCCAGCGGCG
LOC_Os08g04340
Os.23207.1.S1_at--1084--4211Chr08:2123803..2123827 (25 bp)
CCGCTACTTCATATGTGGCTTCAAT
LOC_Os08g04340
Os.23207.1.S1_at--185--9731Chr08:2123823..2123847 (25 bp)
TCAATGGCCATTGCACCGGAGGGAT
LOC_Os08g04340
Os.23207.1.S1_at--835--2651Chr08:2123995..2124019 (25 bp)
AAGCCAGCCCGCTGGTGTTGCATCT
LOC_Os08g04340
Os.23207.1.S1_at--1009--9531Chr08:2124019..2124043 (25 bp)
TCTAGTTGGTCTTAGTTTGGGTGCC
LOC_Os08g04340
Os.23207.1.S1_at--288--10851Chr08:2124035..2124059 (25 bp)
TTGGGTGCCATAGTTGTTGGTCTCA
LOC_Os08g04340
Os.23207.1.S1_at--1136--8811Chr08:2124049..2124073 (25 bp)
TGTTGGTCTCATGGCCTTCTAAATT
LOC_Os08g04340
Os.23207.1.S1_at--68--1651Chr08:2124087..2124111 (25 bp)
ACTTTGTGTATCTCTTCGAAGGCGA
LOC_Os08g04340
Os.23207.1.S1_at--726--8371Chr08:2124107..2124131 (25 bp)
GGCGATCGATTGATTGTGTTCGTAT
LOC_Os08g04340
Os.23207.1.S1_at--513--6871Chr08:2124148..2124172 (25 bp)
GTATTTTCTCTGGTAGAGTCCGGCT
LOC_Os08g04340
Os.23207.1.S1_at--485--6111Chr08:2124163..2124187 (25 bp)
GAGTCCGGCTCATATTGTTATTTAT
LOC_Os08g04340
Target Sequence 
AGTGTTCAAGTATTCTCCAGCGGCGCATGATGTGGTGGNAGGTGAACAAGGCCGACTACGACTCATGCTCCAGCTCCAGC
CCTATCGCCACCTTCAACTCCGGCGATGACACCATCCCTCTCACCGCTACCGGCACCCGCTACTTCATATGTGGCTTCAA
TGGCCATTGCACCGGAGGGATGAAGGTCGCTGTCAAGGTTGAGGCCGCCACCGGCAGCAACCCGGCCCCATCACCGATGA
CCCCTCGTCCACGCACACCGACAGCAATGGCACCGAACGCAATGCCGCCAACGGCTGGTGGCCGGCCCGTGCCTCCATCT
AACTCAGCAAGCCAGCCCGCTGGTGTTGCATCTCTAGTTGGTCTTAGTTTGGGTGCCATAGTTGTTGGTCTCATGGCCTT
CTAAATTAGAGTAAGAAGATACTTTGTGTATCTCTTCGAAGGCGATCGATTGATTGTGTTCGTATATATTGATTGCTTTG
AGTATTTTCTCTGGTAGAGTCCGGCTCATATTGTTATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis