Browse Element(s) Details


Os.57569.2.A1_s_at

Description gb:CB617889
DB_XREF= gi:29612876
DB_XREF=OSIIEa01F22.r
CLONE=OSIIEa01F22
TID=Os.57569.2
CNT=13
FEA=EST
TIER=Stack
STK=11
UG=Os.57569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative translation initiation factor (OSJNBa0026A15.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0450011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04480OsAffx.5700.1.S1_x_at11/118+2197103..2197961hypothetical protein
LOC_Os08g04490OsAffx.5701.1.S1_at11/118+2198769..2203345hypothetical protein
LOC_Os08g04500Os.57569.2.A1_s_at11/118+2203682..2207548Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g04510OsAffx.22848.3.S1_x_at3/118+2212585..2218544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04520Os.13877.1.S1_at6/118+2225597..2229850hypothetical protein
LOC_Os08g04520OsAffx.11193.1.S1_x_at2/118+2225597..2229850hypothetical protein
LOC_Os08g04520OsAffx.28592.1.S1_at1/118+2225597..2229850hypothetical protein
LOC_Os08g04530NANA8+2232237..2233311hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57569.2.A1_s_at--14--971Chr08:2203880..2203904 (25 bp)
AGGACGACCAAGATGCATACACTCA
LOC_Os08g04500
Os.57569.2.A1_s_at--227--651Chr08:2203868..2203892 (25 bp)
ATGCATACACTCATCCAAGTTCGCT
LOC_Os08g04500
Os.57569.2.A1_s_at--200--2191Chr08:2203862..2203886 (25 bp)
ACACTCATCCAAGTTCGCTCAAGGA
LOC_Os08g04500
Os.57569.2.A1_s_at--912--4371Chr08:2203854..2203878 (25 bp)
CCAAGTTCGCTCAAGGATACAATAC
LOC_Os08g04500
Os.57569.2.A1_s_at--422--6471Chr08:2203839..2203863 (25 bp)
GATACAATACACTCCATCTACATCC
LOC_Os08g04500
Os.57569.2.A1_s_at--628--4331Chr08:2203826..2203850 (25 bp)
CCATCTACATCCTCTCTGTTTAATT
LOC_Os08g04500
Os.57569.2.A1_s_at--93--3771Chr08:2203815..2203839 (25 bp)
CTCTCTGTTTAATTAGTTTTCTTCT
LOC_Os08g04500
Os.57569.2.A1_s_at--286--9571Chr08:2203796..2203820 (25 bp)
TCTTCTAATGAAGCGTGACTGTATT
LOC_Os08g04500
Os.57569.2.A1_s_at--615--5411Chr08:2203787..2203811 (25 bp)
GAAGCGTGACTGTATTTCAATTATT
LOC_Os08g04500
Os.57569.2.A1_s_at--631--6871Chr08:2203776..2203800 (25 bp)
GTATTTCAATTATTAGGTCTTCTAT
LOC_Os08g04500
Os.57569.2.A1_s_at--1071--10431Chr08:2203764..2203788 (25 bp)
TTAGGTCTTCTATATATGTATATGT
LOC_Os08g04500
Target Sequence 
AGGACGACCAAGATGCATACACTCATCCAAGTTCGCTCAAGGATACAATACACTCCATCTACATCCTCTCTGTTTAATTA
GTTTTCTTCTAATGAAGCGTGACTGTATTTCAATTATTAGGTCTTCTATATATGTATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57569.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis