Browse Element(s) Details


OsAffx.15983.1.S1_at

Description tigr:9634.m04716
TID=OsAffx.15983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to homeobox protein PpHB4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4829010/11Homeobox domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48230Os.52719.1.S1_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230Os.8227.1.A1_s_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48240OsAffx.28169.2.S1_at11/116+29179298..29180824ATPase, AAA family protein, expressed
LOC_Os06g48240OsAffx.25760.1.S1_x_at1/116+29179298..29180824ATPase, AAA family protein, expressed
LOC_Os06g48250OsAffx.28169.1.S1_at11/116+29183400..29185123ATPase, AAA family protein, expressed
LOC_Os06g48260NANA6+29186079..29186282hypothetical protein
LOC_Os06g48270OsAffx.29680.1.S1_at4/116+29188145..29190042hypothetical protein
LOC_Os06g48280OsAffx.28171.1.S1_at11/116+29192775..29193968hypothetical protein
LOC_Os06g48280OsAffx.24197.1.S1_x_at1/116+29192775..29193968hypothetical protein
LOC_Os06g48290OsAffx.15983.1.S1_at10/116+29197272..29198358Homeobox domain containing protein
LOC_Os06g48300Os.39552.1.A1_s_at11/116+29207091..29209949Protein phosphatase 2C containing protein, expressed
LOC_Os06g48300Os.34372.1.S1_at10/116+29207091..29209949Protein phosphatase 2C containing protein, expressed
LOC_Os06g48310NANA6+29210703..29211002cleavage stimulation factor, putative
LOC_Os06g48320Os.7620.1.S1_at11/116+29214411..29217962pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48320Os.51280.1.S1_at11/116+29214411..29217962pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15983.1.S1_at--739--2211Chr06:29198158..29198182 (25 bp)
ACAAGCTTCAGGGAGCAAGATCATG
LOC_Os06g48290
OsAffx.15983.1.S1_at--317--691Chr06:29198103..29198127 (25 bp)
ATGAGGTCCATCAGGAACAGCGGCG
LOC_Os06g48290
OsAffx.15983.1.S1_at--562--6971Chr06:29198072..29198096 (25 bp)
GTAGCCGCTCGCGTGTACTGAGCCT
LOC_Os06g48290
OsAffx.15983.1.S1_at--327--3451Chr06:29197968..29197992 (25 bp)
CAGTCGACCTTGCTCGAGGACAGCT
LOC_Os06g48290
OsAffx.15983.1.S1_at--219--2211Chr06:29197716..29197958 (25 bp)
ACAACATTCTTTCTCATGCTCAGAA
LOC_Os06g48290
OsAffx.15983.1.S1_at--480--631NONE
ATGCTCAGAAGCACGAGCTCGCTCG
NONE
OsAffx.15983.1.S1_at--728--1591Chr06:29197686..29197710 (25 bp)
AGCTCGCTCGTCAGCTGAAACTGAA
LOC_Os06g48290
OsAffx.15983.1.S1_at--294--1411Chr06:29197657..29197681 (25 bp)
AGACAGGTCGAAGTGTGGTTCCAAA
LOC_Os06g48290
OsAffx.15983.1.S1_at--968--2671Chr06:29197481..29197505 (25 bp)
AAGCGATGCTGCGAGAGCCTGACCG
LOC_Os06g48290
OsAffx.15983.1.S1_at--900--691Chr06:29197435..29197459 (25 bp)
ATGAGCTCATGGAGCTGCGTCGGCT
LOC_Os06g48290
OsAffx.15983.1.S1_at--192--3931Chr06:29197345..29197369 (25 bp)
CGGCGATGGTGAACGTCTGCCCGTC
LOC_Os06g48290
Target Sequence 
ACAAGCTTCAGGGAGCAAGATCATGAAGGGAGAGAGAGGTGCAAGGCTAAGGGTGATGAGGTCCATCAGGAACAGCGGCG
GCGACGGTAGCCGCTCGCGTGTACTGAGCCTCGGCGACGACGGCGGCGATGGCGGCAGCGGCGGCGGCGGCGGTGGCGGC
ACGAGGAAGAAGCTCCAGCTCACCAAGGAGCAGTCGACCTTGCTCGAGGACAGCTTCCGCGTCCACAACATTCTTTCTCA
TGCTCAGAAGCACGAGCTCGCTCGTCAGCTGAAACTGAAGCCGAGACAGGTCGAAGTGTGGTTCCAAAATAGAAGAGCCA
GGACGAAGCTGAAGCAGACTGAGGTGGACTGCGAGTTCTTGAAGCGATGCTGCGAGAGCCTGACCGAGGAGAACAAGCAG
CTCAAGCATGAGCTCATGGAGCTGCGTCGGCTGGCTTCGCCGGCGGCGGCGGCGGCCGGCTCGCAGCTCTACGTCCAGTT
CCCGAGGGCGGCGGCGGCGGCGATGGTGAACGTCTGCCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis