Browse Element(s) Details

Os.51280.1.S1_at

Description

gb:AK062416.1
DB_XREF= gi:32972434
TID=Os.51280.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F07, full insert sequence.
FL= gb:AK062416.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48320	11/11	pleckstrin homology domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48270	OsAffx.29680.1.S1_at	4/11	6	+	29188145..29190042	hypothetical protein
LOC_Os06g48280	OsAffx.28171.1.S1_at	11/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48280	OsAffx.24197.1.S1_x_at	1/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48290	OsAffx.15983.1.S1_at	10/11	6	+	29197272..29198358	Homeobox domain containing protein
LOC_Os06g48300	Os.39552.1.A1_s_at	11/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48300	Os.34372.1.S1_at	10/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48310	NA	NA	6	+	29210703..29211002	cleavage stimulation factor, putative
LOC_Os06g48320	Os.7620.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48320	Os.51280.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_x_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	Os.15740.1.A1_at	9/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.11567.1.S1_s_at	1/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48340	NA	NA	6	+	29233082..29233404	hypothetical protein
LOC_Os06g48350	Os.8401.2.S1_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_a_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	OsAffx.14511.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48360	NA	NA	6	+	29241626..29242393	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0008289	molecular_function	lipid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51280.1.S1_at--592--589	1	Chr06:29217084..29217108 (25 bp)	GAGCTCCCCGAGAGGCTCTTCGGCG	LOC_Os06g48320
Os.51280.1.S1_at--987--79	1	Chr06:29217036..29217060 (25 bp)	ATGGGCGCCGCCAAGTATGTCGAGA	LOC_Os06g48320
Os.51280.1.S1_at--601--471	1	Chr06:29216976..29217000 (25 bp)	GCTGGCGCCGGATTCAGGGTTCACT	LOC_Os06g48320
Os.51280.1.S1_at--463--647	1	Chr06:29216966..29216990 (25 bp)	GATTCAGGGTTCACTCGGCGAAGGT	LOC_Os06g48320
Os.51280.1.S1_at--462--753	1	Chr06:29216943..29216967 (25 bp)	GTGGCCAACGATAGCCGCCACCAAG	LOC_Os06g48320
Os.51280.1.S1_at--87--659	1	Chr06:29214583..29214607 (25 bp)	GATTGAGATCGAACTAGCCGGAGGA	LOC_Os06g48320
Os.51280.1.S1_at--1126--815	1	Chr06:29214534..29214558 (25 bp)	GGAAGCGGCGAATACTCCCTTGATC	LOC_Os06g48320
Os.51280.1.S1_at--288--309	1	Chr06:29214524..29214548 (25 bp)	AATACTCCCTTGATCATAATGTGCA	LOC_Os06g48320
Os.51280.1.S1_at--522--869	1	Chr06:29214505..29214529 (25 bp)	TGTGCAAGTCACTGATTAAGCTGTG	LOC_Os06g48320
Os.51280.1.S1_at--934--161	1	Chr06:29214487..29214511 (25 bp)	AGCTGTGATCAGAACTGAAACCTGA	LOC_Os06g48320
Os.51280.1.S1_at--733--9	1	Chr06:29214443..29214467 (25 bp)	ATTCGTAATTATGATGCCATTCTTC	LOC_Os06g48320

Target Sequence

GAGCTCCCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTATGTCGAGACGGCGCC
CGACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCCGGATTCAGGGTTCACTCGGCGAAGGTGGCCAACGATAGCCGCC
ACCAAGAACGCGCCGCCGGCAAGGTCGGGAGGTCGATGAGCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATAGATG
CGAAGGAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGGAGGAGAAAGGCCGGGGCACATAAA
ATGGGGAAGCGGCGAATACTCCCTTGATCATAATGTGCAAGTCACTGATTAAGCTGTGATCAGAACTGAAACCTGATCGA
TGAGAATAGTATATTATTCGTAATTATGATGCCATTCTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis