Browse Element(s) Details


OsAffx.14511.1.S1_at

Description tigr:9633.m00190
TID=OsAffx.14511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0276011/11expressed protein
LOC_Os06g483501/11Eukaryotic translation initiation factor 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein
LOC_Os05g02730NANA5+955957..956777Homeobox domain containing protein
LOC_Os05g02740OsAffx.26699.1.S1_s_at11/115+965458..966245hypothetical protein
LOC_Os05g02740OsAffx.26699.1.S1_at8/115+965458..966245hypothetical protein
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006446biological_processregulation of translational initiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14511.1.S1_at--741--591Chr05:971291..971556 (25 bp)
ATGCCTGCTCAATAATGATACTCAA
LOC_Os05g02760
OsAffx.14511.1.S1_at--756--6451Chr05:971275..971299 (25 bp)
GATACTCAAGGCAGTCCTGCCGTTG
LOC_Os05g02760
OsAffx.14511.1.S1_at--232--1151Chr05:971263..971287 (25 bp)
AGTCCTGCCGTTGGCATGTCTGGAA
LOC_Os05g02760
OsAffx.14511.1.S1_at--1035--4231Chr05:971256..971280 (25 bp)
CCGTTGGCATGTCTGGAAGCTTACC
LOC_Os05g02760
OsAffx.14511.1.S1_at--1019--10451Chr05:971236..971260 (25 bp)
TTACCAGCGGAGAGGCATCGGTCAG
LOC_Os05g02760
OsAffx.14511.1.S1_at--672--9171Chr05:971194..971218 (25 bp)
TGCCGCCTGGCCTCTGGTGTTCGGA
LOC_Os05g02760
OsAffx.14511.1.S1_at--244--6611Chr05:971158..971182 (25 bp)
GATTGGGAGATATACCACGGCGGTA
LOC_Os05g02760
OsAffx.14511.1.S1_at--1056--11Chr05:971092..971116 (25 bp)
ATTGGGCCAACAGTGGCTACTGTTT
LOC_Os05g02760
OsAffx.14511.1.S1_at--981--2111Chr05:971084..971107 (24 bp)
ACAGTGGCTACTGTTTCGGGCGTGT
LOC_Os05g02760
OsAffx.14511.1.S1_at--956--5372Chr06:29234931..29234958 (25 bp)
GAAGAAGCTGCTTCGCTCTGATGAG
LOC_Os06g48350
OsAffx.14511.1.S1_at--736--3351Chr05:969515..969539 (25 bp)
CACGCTGATGGTGCTGACTCAAAGG
LOC_Os05g02760
Target Sequence 
ATGCCTGCTCAATAATGATACTCAAGGCAGTCCTGCCGTTGGCATGTCTGGAAGCTTACCAGCGGAGAGGCATCGGTCAG
GTGTGGCGGAGGCCATGTGCCGCCTGGCCTCTGGTGTTCGGATGGTGGTTTTGGATTGGGAGATATACCACGGCGGTAGG
GTTGTGAGGGTTCCAAGCGAAAGCTTAGCCCAATGTTTCATTGGGCCAACAGTGGCTACTGTTTCGGGCGTGTGGAAGAA
GCTGCTTCGCTCTGATGAGGAGAGCACGCTGATGGTGCTGACTCAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis