Browse Element(s) Details


OsAffx.26698.1.S1_at

Description tigr:9633.m00186
TID=OsAffx.26698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0272011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein
LOC_Os05g02730NANA5+955957..956777Homeobox domain containing protein
LOC_Os05g02740OsAffx.26699.1.S1_s_at11/115+965458..966245hypothetical protein
LOC_Os05g02740OsAffx.26699.1.S1_at8/115+965458..966245hypothetical protein
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26698.1.S1_at--637--1311Chr05:954258..954282 (25 bp)
AGAGCTTTTCTCAGGTAGTAACGCA
LOC_Os05g02720
OsAffx.26698.1.S1_at--917--10051Chr05:954273..954297 (25 bp)
TAGTAACGCAGATGGCTCTCTTGCC
LOC_Os05g02720
OsAffx.26698.1.S1_at--54--731Chr05:954362..954386 (25 bp)
ATGATATTTCCAGCTATGCACGTCC
LOC_Os05g02720
OsAffx.26698.1.S1_at--759--10131Chr05:954376..954400 (25 bp)
TATGCACGTCCTATCGACATTGCTG
LOC_Os05g02720
OsAffx.26698.1.S1_at--904--5671Chr05:954391..954415 (25 bp)
GACATTGCTGCAGAAGACTCGGACA
LOC_Os05g02720
OsAffx.26698.1.S1_at--663--9771Chr05:954441..954465 (25 bp)
TAATGGCTCTTCTGGTACATCTCGA
LOC_Os05g02720
OsAffx.26698.1.S1_at--1114--7491Chr05:954580..954604 (25 bp)
GTGGATCAGCTTGGTAATCCTCCTC
LOC_Os05g02720
OsAffx.26698.1.S1_at--954--3451Chr05:954614..954638 (25 bp)
CAGTGCCACAGTTTTGTGACCCTTA
LOC_Os05g02720
OsAffx.26698.1.S1_at--650--8671Chr05:954628..954652 (25 bp)
TGTGACCCTTATGCTTCATTGTGGA
LOC_Os05g02720
OsAffx.26698.1.S1_at--137--8871Chr05:954660..954684 (25 bp)
TGATGCATTGCCCATTAGTACTAAT
LOC_Os05g02720
OsAffx.26698.1.S1_at--66--10571Chr05:954750..954774 (25 bp)
TTCTTCTGCTGACACGACTGTGGAG
LOC_Os05g02720
Target Sequence 
AGAGCTTTTCTCAGGTAGTAACGCAGATGGCTCTCTTGCCATGGACCAACAAACATGTTGTGACGTTGATAACAAATCTG
ATAGCAGTGACGATGAAGGATTGAATGATATTTCCAGCTATGCACGTCCTATCGACATTGCTGCAGAAGACTCGGACACA
TTACCATCTCCCACATGTGCAGATAATGGCTCTTCTGGTACATCTCGAGCTGGTAAAAAGAGACCAAGAGGTTCAAAGTC
CCCAAGTAAGAAGCAGCAACCAAAGCCTAAGAACCGTTTCACAGATGCCACTGAGAAAATTAGCAACACAATGGACCATT
TGGTGGATCAGCTTGGTAATCCTCCTCCTCCACCTCCAGTGCCACAGTTTTGTGACCCTTATGCTTCATTGTGGAAGAGG
ATTGATGCATTGCCCATTAGTACTAATGATAAGGTTGTCGTTGGAAATTATTTGGGACGCCAAGAGAATGAGGGGGTGCG
GGGATTTCTTGCTTCTTCTGCTGACACGACTGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis