Browse Element(s) Details


Os.18539.1.S1_at

Description gb:AK069359.1
DB_XREF= gi:32979383
TID=Os.18539.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023016K03, full insert sequence.
FL= gb:AK069359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein
LOC_Os05g02730NANA5+955957..956777Homeobox domain containing protein
LOC_Os05g02740OsAffx.26699.1.S1_s_at11/115+965458..966245hypothetical protein
LOC_Os05g02740OsAffx.26699.1.S1_at8/115+965458..966245hypothetical protein
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010044biological_processresponse to aluminum ion
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18539.1.S1_at--1005--7991Chr05:968469..968493 (25 bp)
GGAGGCCATCCAGCTGCAGATCGTG
LOC_Os05g02750
Os.18539.1.S1_at--955--3431Chr05:968485..968509 (25 bp)
CAGATCGTGGTGATGAACATGCTCA
LOC_Os05g02750
Os.18539.1.S1_at--779--671Chr05:968497..968521 (25 bp)
ATGAACATGCTCATGGGCGCTTCCA
LOC_Os05g02750
Os.18539.1.S1_at--986--791Chr05:968509..968533 (25 bp)
ATGGGCGCTTCCACCGTCAGCAGCA
LOC_Os05g02750
Os.18539.1.S1_at--884--9211Chr05:968624..968648 (25 bp)
TCCACAACACCTTGCATTTTGATTC
LOC_Os05g02750
Os.18539.1.S1_at--958--2471Chr05:968629..968653 (25 bp)
AACACCTTGCATTTTGATTCATTAT
LOC_Os05g02750
Os.18539.1.S1_at--491--6571Chr05:968644..968668 (25 bp)
GATTCATTATGGATTACTGCTTAGT
LOC_Os05g02750
Os.18539.1.S1_at--263--7931Chr05:968654..968678 (25 bp)
GGATTACTGCTTAGTGATTAGTAGT
LOC_Os05g02750
Os.18539.1.S1_at--1110--3131Chr05:968685..968709 (25 bp)
AATTAGTTGTTGAGTACTTACTTAG
LOC_Os05g02750
Os.18539.1.S1_at--304--2051Chr05:968700..968724 (25 bp)
ACTTACTTAGTAGGACGAGAGAGAA
LOC_Os05g02750
Os.18539.1.S1_at--1056--752Chr05:968738..968762 (25 bp)
ATGTCTTGAGGTTAATTTCTTCTTC
LOC_Os05g02750
Target Sequence 
GGAGGCCATCCAGCTGCAGATCGTGGTGATGAACATGCTCATGGGCGCTTCCACCGTCAGCAGCATCCTCTCCACCTACC
TCTGCTGGCCGGCCTTCTTCACCGGCGCCTTCCAGCTCAACGACGCCGTCTTCGCCGCCGACTAATCTTCCCTCTTCCAC
AACACCTTGCATTTTGATTCATTATGGATTACTGCTTAGTGATTAGTAGTAGTAGTAATTAGTTGTTGAGTACTTACTTA
GTAGGACGAGAGAGAAAGTAAGAGTGTGTATGTCTTGAGGTTAATTTCTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis