Browse Element(s) Details


Os.57055.1.S1_at

Description gb:AK110829.1
DB_XREF= gi:32996038
TID=Os.57055.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H12, full insert sequence.
FL= gb:AK110829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0281011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02740OsAffx.26699.1.S1_s_at11/115+965458..966245hypothetical protein
LOC_Os05g02740OsAffx.26699.1.S1_at8/115+965458..966245hypothetical protein
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein
LOC_Os05g02850OsAffx.20354.1.S1_at3/115+1008751..1011612retrotransposon protein, putative, unclassified
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57055.1.S1_at--849--3011Chr05:990162..990186 (25 bp)
AATGCGCGCTGATCTTCAGATGCTT
LOC_Os05g02810
Os.57055.1.S1_at--854--8051Chr05:990219..990243 (25 bp)
GGAGACCTGGGTGCATGCTTTCAGT
LOC_Os05g02810
Os.57055.1.S1_at--392--9191Chr05:990254..990278 (25 bp)
TGCCATTGGCACCAGCTGATAGGTT
LOC_Os05g02810
Os.57055.1.S1_at--508--3851Chr05:990281..990305 (25 bp)
CTGCACTATTCCAAGAGCGGCCAAA
LOC_Os05g02810
Os.57055.1.S1_at--848--8511Chr05:990313..990337 (25 bp)
TGGAAAGACCTGCAGCCTTACATCA
LOC_Os05g02810
Os.57055.1.S1_at--54--10491Chr05:990547..990567 (21 bp)
TTACATCAGGGATCTGCGTGTACCT
LOC_Os05g02810
Os.57055.1.S1_at--95--6991Chr05:990562..990586 (25 bp)
GTACCTGGTGTCTCTTCTGAAGGAC
LOC_Os05g02810
Os.57055.1.S1_at--1155--1631Chr05:990619..990643 (25 bp)
AGCGCAGATGCAGAGCCTATTTTTA
LOC_Os05g02810
Os.57055.1.S1_at--569--1251Chr05:990649..990673 (25 bp)
AGATAATCAATCCTGCGTGCTAAAA
LOC_Os05g02810
Os.57055.1.S1_at--964--4311Chr05:990694..990718 (25 bp)
CCTTCCTGGTGGTGATGCTACTGAA
LOC_Os05g02810
Os.57055.1.S1_at--740--1251Chr05:990853..990877 (25 bp)
AGATTGTCATACTGATCGTCTTGCA
LOC_Os05g02810
Target Sequence 
AATGCGCGCTGATCTTCAGATGCTTGAAGGGGAAGTGCTGTGTGAAAAGCTTGGCGCGGAGACCTGGGTGCATGCTTTCA
GTGTTGCTGATCTGCCATTGGCACCAGCTGATAGGTTTGCTGCACTATTCCAAGAGCGGCCAAAGTGGGAATGGAAAGAC
CTGCAGCCTTACATCAGGGATCTGCGTGTACCTGGTGTCTCTTCTGAAGGACTGCTTATCAAGTACACCAGAAAAACGCA
ACCAAGCGCAGATGCAGAGCCTATTTTTACTGCAAGATAATCAATCCTGCGTGCTAAAAGCCATNTTTCGATGCTGGGCC
CTTCCTGGTGGTGATGCTACTGAATATCTGAAACATGGNTTTGATCTGAATATTGNTTNNTTTNNTTGNGGGGATTGATC
TGAATATTGTTGANANCCCAAGANTTGCTGTGGTTTANTTTTAANGNATGCTCGGNGGCACTNCATATCTTGTTACATAC
AGATTGTCATACTGATCGTCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis