Browse Element(s) Details


OsAffx.14514.1.S1_at

Description tigr:9633.m00199
TID=OsAffx.14514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0284011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein
LOC_Os05g02850OsAffx.20354.1.S1_at3/115+1008751..1011612retrotransposon protein, putative, unclassified
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02870OsAffx.26700.2.S1_x_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02870OsAffx.26700.2.S1_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02880Os.5326.1.S1_a_at11/115+1023905..1027390RNA recognition motif family protein, expressed
LOC_Os05g02890OsAffx.26700.1.S1_s_at11/115+1028123..1030385ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14514.1.S1_at--1150--3531Chr05:1004394..1004640 (25 bp)
CATCCCCAGTCATACAGGTTGATTC
LOC_Os05g02840
OsAffx.14514.1.S1_at--1033--3471Chr05:1004630..1004654 (25 bp)
CAGGTTGATTCTTCCGGTCATGGGA
LOC_Os05g02840
OsAffx.14514.1.S1_at--866--9571Chr05:1004639..1004663 (25 bp)
TCTTCCGGTCATGGGAGTTGGTTCC
LOC_Os05g02840
OsAffx.14514.1.S1_at--810--6611Chr05:1004655..1004679 (25 bp)
GTTGGTTCCCAAGTAAATTGCTCAT
LOC_Os05g02840
OsAffx.14514.1.S1_at--1127--10331Chr05:1004686..1004708 (23 bp)
TTTACATACACCATCTTTGCAGGAT
LOC_Os05g02840
OsAffx.14514.1.S1_at--1014--7711Chr05:1005357..1005381 (25 bp)
GGTGGAATCATCTACATGAGCAGCA
LOC_Os05g02840
OsAffx.14514.1.S1_at--837--631Chr05:1005383..1005407 (25 bp)
ATGCTTTGCACTGAACATGACCTTG
LOC_Os05g02840
OsAffx.14514.1.S1_at--380--2211Chr05:1005426..1005450 (25 bp)
ACAACGCCCGTGGTCAGGACGAGAA
LOC_Os05g02840
OsAffx.14514.1.S1_at--267--7711Chr05:1005484..1005508 (25 bp)
GGTGGCCGCATCGATAGATAACGGA
LOC_Os05g02840
OsAffx.14514.1.S1_at--1043--6191Chr05:1005545..1005569 (25 bp)
GAGGCAATTACGATCCGATGGAGTC
LOC_Os05g02840
OsAffx.14514.1.S1_at--340--2312Chr05:1005630..1005654 (25 bp)
AAAGGCGAGCCGTCCAGCTCGTTGA
LOC_Os05g02840
Target Sequence 
CATCCCCAGTCATACAGGTTGATTCTTCCGGTCATGGGAGTTGGTTCCCAAGTAAATTGCTCATTACATTTTTACATACA
CCATCTTTGCAGGATAAGAACCTGCAAGAGAATGAGCATTGTTTTCATTGGTGGAATCATCTACATGAGCAGCAAATGCT
TTGCACTGAACATGACCTTGCCGCCACTGCCGTCACCTACAACGCCCGTGGTCAGGACGAGAACACAGGGGATGAGGCAG
CGGCGGCATACGGAGAGGTGGCCGCATCGATAGATAACGGAGGAGATAGTGAAAGAGCGAGCCGGCGACGTCGAGGAGAG
GCAATTACGATCCGATGGAGTCGAGATAGGGAGGGAGATCGCGGCGGCAGCGGGAAGGGGAAAGCGGAGTTGCGGCCGGA
GGAAAGGCGAGCCGTCCAGCTCGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis