Browse Element(s) Details


OsAffx.26700.1.S1_s_at

Description tigr:9633.m00205
TID=OsAffx.26700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0289011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein
LOC_Os05g02850OsAffx.20354.1.S1_at3/115+1008751..1011612retrotransposon protein, putative, unclassified
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02870OsAffx.26700.2.S1_x_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02870OsAffx.26700.2.S1_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02880Os.5326.1.S1_a_at11/115+1023905..1027390RNA recognition motif family protein, expressed
LOC_Os05g02890OsAffx.26700.1.S1_s_at11/115+1028123..1030385ABC transporter family protein, putative, expressed
LOC_Os05g02900Os.56000.1.S1_at10/115+1038938..1039978expressed protein
LOC_Os05g02910OsAffx.14516.1.S1_at11/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.29326.1.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.14013.2.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02920OsAffx.15843.1.S1_x_at2/115+1047067..1047725hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26700.1.S1_s_at--875--2891Chr05:1030016..1030040 (25 bp)
AAGGTGCTCGATGCCATCAGCAAGA
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--410--9391Chr05:1030023..1030047 (25 bp)
TCGATGCCATCAGCAAGACGCTCGG
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--140--2771Chr05:1030037..1030061 (25 bp)
AAGACGCTCGGCACCAACATGACGG
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--823--2491Chr05:1030052..1030076 (25 bp)
AACATGACGGCGAACACCTGCGTCA
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--602--3471Chr05:1030103..1030127 (25 bp)
CAGGCCGTCACTGACATTGGCAAGT
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--1117--4491Chr05:1030106..1030130 (25 bp)
GCCGTCACTGACATTGGCAAGTGGA
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--354--9411Chr05:1030185..1030209 (25 bp)
TCGTCTTGCTCGTCGGCAGCAAGAA
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--839--9611Chr05:1030238..1030262 (25 bp)
TCATGTTCAGCTGATATGATGTCTG
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--102--7171Chr05:1030258..1030282 (25 bp)
GTCTGAATTAATGACAGCAAGAAAT
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--903--2971Chr05:1030280..1030304 (25 bp)
AATGTGTGATATGCTAGTAGTGTAT
LOC_Os05g02890
OsAffx.26700.1.S1_s_at--721--7431Chr05:1030299..1030323 (25 bp)
GTGTATTTGTTTGTGTAATTTTCTC
LOC_Os05g02890
Target Sequence 
AAGGTGCTCGATGCCATCAGCAAGACGCTCGGCACCAACATGACGGCGAACACCTGCGTCACCACCGGCGCCGACGTGCT
GGCGCAGCAGGCCGTCACTGACATTGGCAAGTGGAAGTGCCTGCTGGTCACCGTGGCGTGGGGGTTCTTCTTCCGGGCTC
TCTTCTACGTCGTCTTGCTCGTCGGCAGCAAGAACAAGAGGAGGTAGAGAGAGAGGGGCCGATCATGTTCAGCTGATATG
ATGTCTGAATTAATGACAGCAAGAAATGTGTGATATGCTAGTAGTGTATTTGTTTGTGTAATTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26700.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis