Browse Element(s) Details


OsAffx.26700.2.S1_x_at

Description tigr:9633.m00202
TID=OsAffx.26700.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to ABC transporter of Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0287011/11ABC transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein
LOC_Os05g02850OsAffx.20354.1.S1_at3/115+1008751..1011612retrotransposon protein, putative, unclassified
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02870OsAffx.26700.2.S1_x_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02870OsAffx.26700.2.S1_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02880Os.5326.1.S1_a_at11/115+1023905..1027390RNA recognition motif family protein, expressed
LOC_Os05g02890OsAffx.26700.1.S1_s_at11/115+1028123..1030385ABC transporter family protein, putative, expressed
LOC_Os05g02900Os.56000.1.S1_at10/115+1038938..1039978expressed protein
LOC_Os05g02910OsAffx.14516.1.S1_at11/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.29326.1.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.14013.2.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02920OsAffx.15843.1.S1_x_at2/115+1047067..1047725hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26700.2.S1_x_at--1048--10551Chr05:1020625..1020649 (25 bp)
TTCTTCGCGCTGACCGTGCTGGCGT
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--1022--3591Chr05:1020267..1020291 (25 bp)
CATTGACGGCGGAGACGTGCGTGGT
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--555--8052Chr03:19148203..19148381 (25 bp)
GGAGACGTGCGTGGTGACCGGCGCC
NONE
OsAffx.26700.2.S1_x_at--423--8391Chr05:1020224..1020248 (25 bp)
GGCGCAGCAGGCTGTCACGGACATC
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--272--3411Chr05:1020220..1020244 (25 bp)
CAGCAGGCTGTCACGGACATCGGCA
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--573--3491Chr05:1020217..1020241 (25 bp)
CAGGCTGTCACGGACATCGGCAGGT
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--300--3871Chr05:1020213..1020237 (25 bp)
CTGTCACGGACATCGGCAGGTGGAA
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--690--2091Chr05:1020204..1020228 (25 bp)
ACATCGGCAGGTGGAAGTGCTTGCT
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--535--10351Chr05:1020157..1020181 (25 bp)
TTTTTCCGGTTTCTGTTCTATATCG
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--943--10651Chr05:1020154..1020178 (25 bp)
TTCCGGTTTCTGTTCTATATCGTGC
LOC_Os05g02870
OsAffx.26700.2.S1_x_at--889--4251Chr05:1020152..1020176 (25 bp)
CCGGTTTCTGTTCTATATCGTGCTG
LOC_Os05g02870
Target Sequence 
TTCTTCGCGCTGACCGTGCTGGCGTCGTTCTGGGCGGGGAGCGGGTTCGTGACGTTCCTGTCCGCGGTGGTGCCGCACGT
CATGCTGGGATACACGGTGGTCGTCGCCATCCTCGCCTACTTCCTGCTCTTCTCCGGCTTCTTCATCAACCGCGACCGCA
TCCCCAGCTACTGGATCTGGTTCCACTACCTGTCGCTGGTCAAGTATCCGTACCAGGCGGTGCTCCAGAACGAGTTCCGC
GACGCGGCGCGGTGCTTCTCCCGCGGCGTCGAGATGTTCGACGGGACGCCGATCGGCGCCATGTCCAAGGCCGTCAAGCT
CAAGGTGCTCGACGCCATCGGCGCCACGCTCGGCGCGCCATTGACGGCGGAGACGTGCGTGGTGACCGGCGCCGACGTGC
TGGCGCAGCAGGCTGTCACGGACATCGGCAGGTGGAAGTGCTTGCTGGTCACCGTGGCGTTTGGTTTCTTTTTCCGGTTT
CTGTTCTATATCGTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26700.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis