Browse Element(s) Details


Os.56000.1.S1_at

Description gb:AK109108.1
DB_XREF= gi:32994317
TID=Os.56000.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-B10, full insert sequence.
FL= gb:AK109108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0290010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02870OsAffx.26700.2.S1_x_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02870OsAffx.26700.2.S1_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02880Os.5326.1.S1_a_at11/115+1023905..1027390RNA recognition motif family protein, expressed
LOC_Os05g02890OsAffx.26700.1.S1_s_at11/115+1028123..1030385ABC transporter family protein, putative, expressed
LOC_Os05g02900Os.56000.1.S1_at10/115+1038938..1039978expressed protein
LOC_Os05g02910OsAffx.14516.1.S1_at11/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.29326.1.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.14013.2.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02920OsAffx.15843.1.S1_x_at2/115+1047067..1047725hypothetical protein
LOC_Os05g02940Os.3895.1.S1_at11/115+1062103..1064141Calcium-transporting ATPase 1, endoplasmic reticulum-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56000.1.S1_at--1030--8311Chr05:1039482..1039506 (25 bp)
GGCTCTGTCAACAGCGCGAGCAGCA
LOC_Os05g02900
Os.56000.1.S1_at--591--1511Chr05:1039500..1039524 (25 bp)
AGCAGCATCACCAGGGAGACGGCCT
LOC_Os05g02900
Os.56000.1.S1_at--57--5771Chr05:1039685..1039709 (25 bp)
GACGTCATCACGCTGAACACTAGGC
LOC_Os05g02900
Os.56000.1.S1_at--111--3711Chr05:1039704..1039728 (25 bp)
CTAGGCGCGCGCATGCGAGCTAGCT
LOC_Os05g02900
Os.56000.1.S1_at--1140--4851Chr05:1039722..1039746 (25 bp)
GCTAGCTGCTCTAGCTAAGCTTGTG
LOC_Os05g02900
Os.56000.1.S1_at--632--2711Chr05:1039738..1039762 (25 bp)
AAGCTTGTGTGTTTCACCGTGTTTT
LOC_Os05g02900
Os.56000.1.S1_at--979--1771Chr05:1039753..1039777 (25 bp)
ACCGTGTTTTTTCGTGTGCTATACA
LOC_Os05g02900
Os.56000.1.S1_at--1115--10471Chr05:1039783..1039807 (25 bp)
TTAAATTAAAATTCCTCCTCTCGAG
LOC_Os05g02900
Os.56000.1.S1_at--635--631NONE
ATGCTTGGACAAGTATCGATCGGCT
NONE
Os.56000.1.S1_at--825--491Chr05:1039900..1039924 (25 bp)
ATCGGCTGCCTACTTGTATTGTGAA
LOC_Os05g02900
Os.56000.1.S1_at--324--731Chr05:1039950..1039974 (25 bp)
ATGTTACTCTATTTATTACCACTTG
LOC_Os05g02900
Target Sequence 
GGCTCTGTCAACAGCGCGAGCAGCATCACCAGGGAGACGGCCTCCACCGCCGGTGACAGGAAGAGGATCAGGCGGCGGCG
GAGCAGCAAGGGGTGCGCCGTGGCGCGGAGGCTGCAGGAGGCGTCGTGCGGCGCCGTGCGCGCGCTCTTCCACCGCCTCC
TCGCCTGCACCACCAGCGTCGAGGTCGCCGACGCCGGCGAGCCGACGTCATCACGCTGAACACTAGGCGCGCGCATGCGA
GCTAGCTGCTCTAGCTAAGCTTGTGTGTTTCACCGTGTTTTTTCGTGTGCTATACAGTAAATTAAATTAAAATTCCTCCT
CTCGAGTTAAGTTAAGTACAGTAGCTAGCAAGCAGTAATTTTATTTATTTCCACGAGTAGTAATTAAACTAGCAATATGT
ATGCTTGGACAAGTATCGATCGGCTGCCTACTTGTATTGTGAATTTGTGATGTAAGTCATTTGTGTTTATGTTACTCTAT
TTATTACCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis