Browse Element(s) Details


OsAffx.14516.1.S1_at

Description tigr:9633.m00207
TID=OsAffx.14516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0291011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02870OsAffx.26700.2.S1_x_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02870OsAffx.26700.2.S1_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02880Os.5326.1.S1_a_at11/115+1023905..1027390RNA recognition motif family protein, expressed
LOC_Os05g02890OsAffx.26700.1.S1_s_at11/115+1028123..1030385ABC transporter family protein, putative, expressed
LOC_Os05g02900Os.56000.1.S1_at10/115+1038938..1039978expressed protein
LOC_Os05g02910OsAffx.14516.1.S1_at11/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.29326.1.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.14013.2.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02920OsAffx.15843.1.S1_x_at2/115+1047067..1047725hypothetical protein
LOC_Os05g02940Os.3895.1.S1_at11/115+1062103..1064141Calcium-transporting ATPase 1, endoplasmic reticulum-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14516.1.S1_at--274--1611Chr05:1043116..1043140 (25 bp)
AGCTGTCCTTGTGTGGTACGAGCAA
LOC_Os05g02910
OsAffx.14516.1.S1_at--1054--5171Chr05:1043095..1043119 (25 bp)
GCAAGTAGTACAGTGCCGTGCACAC
LOC_Os05g02910
OsAffx.14516.1.S1_at--13--9191Chr05:1043082..1043106 (25 bp)
TGCCGTGCACACGAGCAGCAGACAG
LOC_Os05g02910
OsAffx.14516.1.S1_at--814--1511Chr05:1043066..1043090 (25 bp)
AGCAGACAGCAGAGGCAGCTTGGTT
LOC_Os05g02910
OsAffx.14516.1.S1_at--64--6611Chr05:1043044..1043068 (25 bp)
GTTGGTGGTTACTGCTCCAGAAACT
LOC_Os05g02910
OsAffx.14516.1.S1_at--1020--10411Chr05:1043005..1043029 (25 bp)
TTATAATCAGCAATTCAGCACACGA
LOC_Os05g02910
OsAffx.14516.1.S1_at--634--9651Chr05:1042991..1043015 (25 bp)
TCAGCACACGAATGGGCAGGACAGT
LOC_Os05g02910
OsAffx.14516.1.S1_at--430--9871Chr05:1042513..1042988 (25 bp)
TACAGTGCAGTACTCCATGCGGCGG
LOC_Os05g02910
OsAffx.14516.1.S1_at--714--2851Chr05:1041591..1041615 (25 bp)
AAGGGAAGCAGCACGTACCCGTGTG
LOC_Os05g02910
OsAffx.14516.1.S1_at--190--3971Chr05:1041539..1041563 (25 bp)
CGGATGTGCTTTCCAGGTCGGACAC
LOC_Os05g02910
OsAffx.14516.1.S1_at--241--9151Chr05:1041528..1041552 (25 bp)
TCCAGGTCGGACACGGCTTCTTGGT
LOC_Os05g02910
Target Sequence 
AGCTGTCCTTGTGTGGTACGAGCAAGTAGTACAGTGCCGTGCACACGAGCAGCAGACAGCAGAGGCAGCTTGGTTGGTGG
TTACTGCTCCAGAAACTGAGAGAGCTGCTAATTATAATCAGCAATTCAGCACACGAATGGGCAGGACAGTAGTACAGTGC
AGTACTCCATGCGGCGGTCTGAACCGTTCGATGGCTACAATCAACAGGGAGACGACCAGACGTGGTGCTCGGGTTGATGG
TGGCGGAAGCGATTGGCGATCCAGTCGGTGGGTCGGACACTCCGGGCGGGTGGCTCGGACTTTCCGGTGCTGGCGGAGGT
CGTCGCGGGCTGTTTCCGGCGAAGGGAAGCAGCACGTACCCGTGTGGGGTGGAGGCGGTGAAGGATCATGTGGCGGATGT
GCTTTCCAGGTCGGACACGGCTTCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis