Browse Element(s) Details


Os.3895.1.S1_at

Description gb:AK062874.1
DB_XREF= gi:32972892
TID=Os.3895.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-C10, full insert sequence.
FL= gb:AK062874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0294011/11Calcium-transporting ATPase 1, endoplasmic reticulum-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02900Os.56000.1.S1_at10/115+1038938..1039978expressed protein
LOC_Os05g02910OsAffx.14516.1.S1_at11/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.29326.1.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02910OsAffx.14013.2.S1_at1/115+1040276..1044717hypothetical protein
LOC_Os05g02920OsAffx.15843.1.S1_x_at2/115+1047067..1047725hypothetical protein
LOC_Os05g02940Os.3895.1.S1_at11/115+1062103..1064141Calcium-transporting ATPase 1, endoplasmic reticulum-type, putative, expressed
LOC_Os05g02950NANA5+1070454..1075388retrotransposon protein, putative, unclassified
LOC_Os05g02960Os.28943.1.S1_x_at1/115+1076008..1079030retrotransposon protein, putative, unclassified
LOC_Os05g02970Os.52398.1.S1_at11/115+1081423..1083255expressed protein
LOC_Os05g02980Os.50573.1.S1_at10/115+1086849..1088051expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006816biological_processcalcium ion transport
GO:0010042biological_processresponse to manganese ion
GO:0030026biological_processmanganese ion homeostasis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3895.1.S1_at--1036--6691Chr05:1063560..1063584 (25 bp)
GTTCCTCGCGCAAGTGTTTGGCATC
LOC_Os05g02940
Os.3895.1.S1_at--523--7291Chr05:1063585..1063609 (25 bp)
GTGCCGCTCAGCTTGAACGAGTGGC
LOC_Os05g02940
Os.3895.1.S1_at--335--5771Chr05:1063648..1063672 (25 bp)
GACGAGGTTCTCAAGTTTGTCGGAA
LOC_Os05g02940
Os.3895.1.S1_at--418--1051Chr05:1063672..1063696 (25 bp)
AGGTGTACAAGCTCATCAGGCCCCA
LOC_Os05g02940
Os.3895.1.S1_at--7--4851Chr05:1063732..1063756 (25 bp)
GCTAACAGTGATTCTTCAGACTCAT
LOC_Os05g02940
Os.3895.1.S1_at--318--2391Chr05:1063869..1063893 (25 bp)
AAACAGGTCATCACTCTTTGGGAAG
LOC_Os05g02940
Os.3895.1.S1_at--238--5351Chr05:1063890..1063914 (25 bp)
GAAGTTGATAACCTTTGCTGTTCTT
LOC_Os05g02940
Os.3895.1.S1_at--882--8251Chr05:1063964..1063988 (25 bp)
GGCAGCAGCATTGTTCTGTTGGCAA
LOC_Os05g02940
Os.3895.1.S1_at--875--8231Chr05:1063984..1064008 (25 bp)
GGCAACATTTTGCTTCTGTGAATTA
LOC_Os05g02940
Os.3895.1.S1_at--509--151Chr05:1064037..1064061 (25 bp)
ATTATACACATTTCTGCCTACCTTA
LOC_Os05g02940
Os.3895.1.S1_at--830--1611Chr05:1064087..1064111 (25 bp)
AGCTGGTTGATCTGGCAGGCCAATA
LOC_Os05g02940
Target Sequence 
GTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTGCTGGTGTTGCTTGTTGCACTCCCGGTGG
TGCTCATCGACGAGGTTCTCAAGTTTGTCGGAAGGTGTACAAGCTCATCAGGCCCCAAGAGGCGAACCAGGAAGCAGAAG
GGCGAGTAAAATGCTAACAGTGATTCTTCAGACTCATCAGTAACAAAAGTCACTGAATTTGTTGTGATCAAGTAACAATG
ATCACCAAATGATGTTTATTCAATAGAAATATGTCCAATACAAGAAAGTTCAGGAAAGAGATTTTCTCAAAACAGGTCAT
CACTCTTTGGGAAGTTGATAACCTTTGCTGTTCTTTTATTCCTTGTCCTAAATGGTACTATACTGAGCTCACAGCAAACC
AGCAGGCAGCAGCATTGTTCTGTTGGCAACATTTTGCTTCTGTGAATTATTATATATAGATGAAATATTTAGATCAAATT
ATACACATTTCTGCCTACCTTATTATGCTTCTGCTGTGTGGTTTCTGAGCTGGTTGATCTGGCAGGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis