Browse Element(s) Details


Os.52398.1.S1_at

Description gb:AK066865.1
DB_XREF= gi:32976883
TID=Os.52398.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013087A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087A14, full insert sequence.
FL= gb:AK066865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0297011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02940Os.3895.1.S1_at11/115+1062103..1064141Calcium-transporting ATPase 1, endoplasmic reticulum-type, putative, expressed
LOC_Os05g02950NANA5+1070454..1075388retrotransposon protein, putative, unclassified
LOC_Os05g02960Os.28943.1.S1_x_at1/115+1076008..1079030retrotransposon protein, putative, unclassified
LOC_Os05g02970Os.52398.1.S1_at11/115+1081423..1083255expressed protein
LOC_Os05g02980Os.50573.1.S1_at10/115+1086849..1088051expressed protein
LOC_Os05g02990Os.12004.1.S1_at11/115+1093800..1096088expressed protein
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52398.1.S1_at--985--4671Chr05:1082396..1082420 (25 bp)
GCGGTACAACAGATTCTTATCCCCT
LOC_Os05g02970
Os.52398.1.S1_at--1155--10291Chr05:1082412..1082436 (25 bp)
TTATCCCCTCGTGCTCTAAGGGAGC
LOC_Os05g02970
Os.52398.1.S1_at--828--2431Chr05:1082452..1082476 (25 bp)
AAAAGACAGCTGTTACCGCTCTACA
LOC_Os05g02970
Os.52398.1.S1_at--1128--971Chr05:1082476..1082500 (25 bp)
AGGAGTCTCCTGAAGCGTTGTGCCT
LOC_Os05g02970
Os.52398.1.S1_at--363--5231Chr05:1082814..1082838 (25 bp)
GAATGTTCAACTTTGGTGGGCTGGA
LOC_Os05g02970
Os.52398.1.S1_at--1072--6691Chr05:1083005..1083029 (25 bp)
GTTCCTCAATCCTCATGAGCTTTGA
LOC_Os05g02970
Os.52398.1.S1_at--168--6131Chr05:1083028..1083052 (25 bp)
GAGTGTGCTTCAACTACCCTTCATT
LOC_Os05g02970
Os.52398.1.S1_at--828--1811Chr05:1083043..1083067 (25 bp)
ACCCTTCATTGTTCCTGCAGAGTTA
LOC_Os05g02970
Os.52398.1.S1_at--1114--6931Chr05:1083097..1083121 (25 bp)
GTAGTATGCAAGTTATCCCCGTTGT
LOC_Os05g02970
Os.52398.1.S1_at--192--2551Chr05:1083147..1083171 (25 bp)
AACTCCTATTTTTATCTGTGCCATT
LOC_Os05g02970
Os.52398.1.S1_at--456--3891Chr05:1083162..1083186 (25 bp)
CTGTGCCATTGAAAACCTGTATAGA
LOC_Os05g02970
Target Sequence 
GCGGTACAACAGATTCTTATCCCCTCGTGCTCTAAGGGAGCATATCAAGAACATCGAAAAGACAGCTGTTACCGCTCTAC
AGGAGTCTCCTGAAGCGTTGTGCCTGCAACAGAAATCATCAGGCGACAAGCTTGAGAATGTTCAACTTTGGTGGGCTGGA
AAAGAGCTGGCCATGGGCAAGAAGTTATGTGACTATATTGGTGTTAATGACAAAACAAAGATTATCATCAGGTTAAAGCA
TGTTCCTCAATCCTCATGAGCTTTGAGTGTGCTTCAACTACCCTTCATTGTTCCTGCAGAGTTAGTTTACTTTTGTTTTT
GGGTAGTATGCTAGTAGTATGCAAGTTATCCCCGTTGTAAATTATTATTCATCTTCTTCAGAAAACTCCTATTTTTATCT
GTGCCATTGAAAACCTGTATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis