Browse Element(s) Details


Os.49718.1.S1_at

Description gb:AK066388.1
DB_XREF= gi:32976406
TID=Os.49718.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066G20, full insert sequence.
FL= gb:AK120088.1 gb:AK066388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0300011/11Integral membrane protein TerC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02970Os.52398.1.S1_at11/115+1081423..1083255expressed protein
LOC_Os05g02980Os.50573.1.S1_at10/115+1086849..1088051expressed protein
LOC_Os05g02990Os.12004.1.S1_at11/115+1093800..1096088expressed protein
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed
LOC_Os05g03010OsAffx.26702.1.S1_at11/115+1115992..1117997hypothetical protein
LOC_Os05g03020Os.33140.1.A1_a_at11/115+1120053..1123770Zinc finger, C2H2 type family protein, expressed
LOC_Os05g03030OsAffx.26703.1.S1_x_at11/115+1124360..1125115ribosomal protein L10 family protein, putative, expressed
LOC_Os05g03040Os.11230.1.S1_s_at11/115+1134013..1138231floral homeotic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49718.1.S1_at--646--2251Chr05:1105577..1105601 (25 bp)
AAATACTGCTTCCTGAGAGCTGCTC
LOC_Os05g03000
Os.49718.1.S1_at--402--4971Chr05:1105523..1105547 (25 bp)
GCATCATTTACTTTGATCACCAGAT
LOC_Os05g03000
Os.49718.1.S1_at--1149--8031Chr05:1105473..1105497 (25 bp)
GGAGTTTTCACAAGACGACCACTGG
LOC_Os05g03000
Os.49718.1.S1_at--663--4071Chr05:1105458..1105482 (25 bp)
CGACCACTGGGCTTGTACGTATAGT
LOC_Os05g03000
Os.49718.1.S1_at--268--6891Chr05:1105440..1105464 (25 bp)
GTATAGTAATGCTCGTGTGGTTTTG
LOC_Os05g03000
Os.49718.1.S1_at--1096--1711Chr05:1105402..1105426 (25 bp)
ACCAGTGGTTTTGATGTGTGACCCA
LOC_Os05g03000
Os.49718.1.S1_at--80--1831Chr05:1105305..1105329 (25 bp)
ACGCCTTGGTTCGTCTTGAAGCAGA
LOC_Os05g03000
Os.49718.1.S1_at--1078--2412Chr01:41386696..41386721 (23 bp)
AAAACAGCAGCAGCCTACTAGGATG
NONE
Os.49718.1.S1_at--927--9891Chr05:1105247..1105271 (25 bp)
TACTAGGATGACTGACTGGCATGGT
LOC_Os05g03000
Os.49718.1.S1_at--416--8591Chr05:1105226..1105250 (25 bp)
TGGTAATCATAATTCTTCCCCTTTT
LOC_Os05g03000
Os.49718.1.S1_at--373--6011Chr05:1105040..1105064 (25 bp)
GAGAGCATTATCTGAAATCCCTTGC
LOC_Os05g03000
Target Sequence 
AAATACTGCTTCCTGAGAGCTGCTCCTTTTATCTGGATGCAGGGGTTCATCAATGCATCATTTACTTTGATCACCAGATG
TAGAGCAGTAGAGGAGGTCCTTGAGGAGTTTTCACAAGACGACCACTGGGCTTGTACGTATAGTAATGCTCGTGTGGTTT
TGAAGGNCAANTCACAACCAGTGGTTTTGATGTGTGACCCANTATAGANTTATGAGGTTGATGNACTGNCCAAGGCATGA
AGNACTGGTGTCTGACATCCAAATTTNAAGGCCATGTACGCCTTGGTTCGTCTTGAAGCAGAAGGGTTAGTGGAAGATCC
AAAACAGCAGCAGCCTACTAGGATGACTGACTGGCATGGTAATCATAATTCTTCCCCTTTTTTTTGAGCTTGTAAAACAA
GCTCACAAGCATGACATGCACAAGCAATGTCAAATTTTATTGCAACAAAACATATGGTGTATAGCTGACCATTATATTTT
GGTTCGTTTAGNCTACTGATCCTTATTATGTGGTTATATTAAACTGTTGTGATTCGTGGGNCTGAGAGCATTATCTGAAA
TCCCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis