Browse Element(s) Details


OsAffx.26703.1.S1_x_at

Description tigr:9633.m00220
TID=OsAffx.26703.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0303011/11ribosomal protein L10 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed
LOC_Os05g03010OsAffx.26702.1.S1_at11/115+1115992..1117997hypothetical protein
LOC_Os05g03020Os.33140.1.A1_a_at11/115+1120053..1123770Zinc finger, C2H2 type family protein, expressed
LOC_Os05g03030OsAffx.26703.1.S1_x_at11/115+1124360..1125115ribosomal protein L10 family protein, putative, expressed
LOC_Os05g03040Os.11230.1.S1_s_at11/115+1134013..1138231floral homeotic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26703.1.S1_x_at--678--4971Chr05:1124931..1124955 (25 bp)
GCATCTGGTGCCACGGGTTCACGGT
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--140--7751Chr05:1124909..1124933 (25 bp)
GGTGTCGCAGCTGCGGAGCATCCGC
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--63--1611Chr05:1124901..1124925 (25 bp)
AGCTGCGGAGCATCCGCGCCAGCCT
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--342--5931Chr05:1124894..1124918 (25 bp)
GAGCATCCGCGCCAGCCTGCCGCCG
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--45--5751Chr05:1124870..1124894 (25 bp)
GACGGCGAGGCTGGTTGTGGCGAAG
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--1100--8371Chr05:1124867..1124891 (25 bp)
GGCGAGGCTGGTTGTGGCGAAGAAC
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--643--8031Chr05:1124708..1124732 (25 bp)
GGAGTGGAAGCTGCAGCTCAACGAC
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--894--1571Chr05:1124694..1124718 (25 bp)
AGCTCAACGACTTCACTGGCGCCGT
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--392--9651Chr05:1124682..1124706 (25 bp)
TCACTGGCGCCGTCTTCGAGGGCCG
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--766--1851Chr05:1124643..1124667 (25 bp)
ACGACTTCGCGCAGCTCGAGTCCAT
LOC_Os05g03030
OsAffx.26703.1.S1_x_at--834--6091Chr05:1124626..1124650 (25 bp)
GAGTCCATGCCCACCAGGGTCCAGT
LOC_Os05g03030
Target Sequence 
GCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGAGCATCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTG
GCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGC
GTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGC
TCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACC
AGGGTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26703.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis