Browse Element(s) Details


OsAffx.26702.1.S1_at

Description tigr:9633.m00218
TID=OsAffx.26702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=leucine rich repeat-like protein (fragment) of Arabidopsis thaliana, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0301011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02990Os.12004.1.S1_at11/115+1093800..1096088expressed protein
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed
LOC_Os05g03010OsAffx.26702.1.S1_at11/115+1115992..1117997hypothetical protein
LOC_Os05g03020Os.33140.1.A1_a_at11/115+1120053..1123770Zinc finger, C2H2 type family protein, expressed
LOC_Os05g03030OsAffx.26703.1.S1_x_at11/115+1124360..1125115ribosomal protein L10 family protein, putative, expressed
LOC_Os05g03040Os.11230.1.S1_s_at11/115+1134013..1138231floral homeotic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26702.1.S1_at--912--3011Chr05:1117940..1117964 (25 bp)
AATGCTAAAGCGATTGGTCCTAGTC
LOC_Os05g03010
OsAffx.26702.1.S1_at--432--6611Chr05:1117929..1117953 (25 bp)
GATTGGTCCTAGTCGAGGTCACCTA
LOC_Os05g03010
OsAffx.26702.1.S1_at--754--1011Chr05:1117914..1117938 (25 bp)
AGGTCACCTACCTCGTGTCGTTACT
LOC_Os05g03010
OsAffx.26702.1.S1_at--199--9431Chr05:1117902..1117926 (25 bp)
TCGTGTCGTTACTTGTCCGAGGGCA
LOC_Os05g03010
OsAffx.26702.1.S1_at--554--6751Chr05:1117895..1117919 (25 bp)
GTTACTTGTCCGAGGGCAGTGCCCG
LOC_Os05g03010
OsAffx.26702.1.S1_at--317--6811Chr05:1117753..1117777 (25 bp)
GTTTTCTCAGGAGCCGGCGACTGGA
LOC_Os05g03010
OsAffx.26702.1.S1_at--757--8551Chr05:1116077..1116098 (22 bp)
TGGAGGTTCACTGGGCTTGTGCCTA
LOC_Os05g03010
OsAffx.26702.1.S1_at--257--7291Chr05:1116059..1116083 (25 bp)
GTGCCTACGTCATTGCTAAACCTTG
LOC_Os05g03010
OsAffx.26702.1.S1_at--827--10311Chr05:1116047..1116071 (25 bp)
TTGCTAAACCTTGGGAAGCTTACCA
LOC_Os05g03010
OsAffx.26702.1.S1_at--146--4891Chr05:1116030..1116054 (25 bp)
GCTTACCAAGGTTACGCTTTCGGAG
LOC_Os05g03010
OsAffx.26702.1.S1_at--689--991Chr05:1116022..1116046 (25 bp)
AGGTTACGCTTTCGGAGAACCTGCT
LOC_Os05g03010
Target Sequence
AATGCTAAAGCGATTGGTCCTAGTCGAGGTCACCTACCTCGTGTCGTTACTTGTCCGAGGGCAGTGCCCGGAGTTGAAGA
AGAAGACGGAGGTGTCGGGGGACGGTATCCCGGAGTTGAAGAAGAAAATGGAGGTGGGTTTCCTCGGGGGTCGGAACCGG
AGTTGAAGAAGAAGAAGACGGAGGTGGGTTTTCTCAGGAGCCGGCGACTGGAGTTGAAGAAGATGGAGGTTCACTGGGCT
TGTGCCTACGTCATTGCTAAACCTTGGGAAGCTTACCAAGGTTACGCTTTCGGAGAACCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis