Browse Element(s) Details


Os.11230.1.S1_s_at

Description gb:AU197856
DB_XREF= gi:14713904
DB_XREF=AU197856
CLONE=S11204
TID=Os.11230.1
CNT=21
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11230 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:P47927 (A.thaliana) AP2_ARATH Floral homeotic protein APETALA2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0304011/11floral homeotic protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed
LOC_Os05g03010OsAffx.26702.1.S1_at11/115+1115992..1117997hypothetical protein
LOC_Os05g03020Os.33140.1.A1_a_at11/115+1120053..1123770Zinc finger, C2H2 type family protein, expressed
LOC_Os05g03030OsAffx.26703.1.S1_x_at11/115+1124360..1125115ribosomal protein L10 family protein, putative, expressed
LOC_Os05g03040Os.11230.1.S1_s_at11/115+1134013..1138231floral homeotic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009408biological_processresponse to heat
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11230.1.S1_s_at--703--4351Chr05:1134582..1134606 (25 bp)
CCAGATCATCGGATCAGAAGAGGAA
LOC_Os05g03040
Os.11230.1.S1_s_at--92--6971Chr05:1134544..1134568 (25 bp)
GTAGCTGTTCCAAGCTGGGCATGGA
LOC_Os05g03040
Os.11230.1.S1_s_at--979--2711Chr05:1134520..1134544 (25 bp)
AAGCAGGTGAGCCATCATCACCCTG
LOC_Os05g03040
Os.11230.1.S1_s_at--432--4431Chr05:1134287..1134311 (25 bp)
GCCATCACCACCACTGTAAATTTTG
LOC_Os05g03040
Os.11230.1.S1_s_at--410--3371Chr05:1134282..1134306 (25 bp)
CACCACCACTGTAAATTTTGCCGGG
LOC_Os05g03040
Os.11230.1.S1_s_at--851--3351Chr05:1134279..1134303 (25 bp)
CACCACTGTAAATTTTGCCGGGAAG
LOC_Os05g03040
Os.11230.1.S1_s_at--285--10511Chr05:1134217..1134241 (25 bp)
TTCAACGTTTTCGTCTTTGCGCCGG
LOC_Os05g03040
Os.11230.1.S1_s_at--358--4251Chr05:1134184..1134208 (25 bp)
CCGGGTGGTTTCTTGTAGTGATTAG
LOC_Os05g03040
Os.11230.1.S1_s_at--903--31Chr05:1134156..1134180 (25 bp)
ATTGGGATTCATGACTGTATTTGCA
LOC_Os05g03040
Os.11230.1.S1_s_at--469--8951Chr05:1134145..1134169 (25 bp)
TGACTGTATTTGCATCCACACATAA
LOC_Os05g03040
Os.11230.1.S1_s_at--1071--191Chr05:1134138..1134162 (25 bp)
ATTTGCATCCACACATAAAACGCCC
LOC_Os05g03040
Target Sequence 
CCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCATGGAAGCAGGTGAGCCATCAT
CACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTCTCCTCCTCNTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGC
ATCATCAGGATTCTCCAAAGCCGCCACGACAGCAGCTGCTGCCNAACACACTGCCACCCTCCGGTTCGACCCGACGGCGC
CGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTG
CCGGGAAGCCGGCAAATTTTTTTTTNNNNCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGG
CCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACACATAAAACGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11230.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis