Browse Element(s) Details


Os.3887.1.S1_at

Description gb:CB096255
DB_XREF= gi:27920447
DB_XREF=AF53-Rpf_01C_J15_T7.ab1
CLONE=C0000231
TID=Os.3887.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.3887 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51505 (A.thaliana) T51505 hypothetical protein F5E19_70 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0282011/11protein transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein
LOC_Os05g02850OsAffx.20354.1.S1_at3/115+1008751..1011612retrotransposon protein, putative, unclassified
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02870OsAffx.26700.2.S1_x_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02870OsAffx.26700.2.S1_at11/115+1020122..1022164ABC transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3887.1.S1_at--184--7751Chr05:993123..993147 (25 bp)
GGTGTACACTGAATCAGCGTGTGCT
LOC_Os05g02820
Os.3887.1.S1_at--124--9131Chr05:993102..993126 (25 bp)
TGCTGAGGCTAGCAAGGCTCTGCAT
LOC_Os05g02820
Os.3887.1.S1_at--740--911Chr05:993088..993112 (25 bp)
AGGCTCTGCATGAGGCAAAGACTGA
LOC_Os05g02820
Os.3887.1.S1_at--487--6671Chr05:993020..993044 (25 bp)
GTTGCTGAAGCCAACAAGTCTGTGC
LOC_Os05g02820
Os.3887.1.S1_at--208--3231Chr05:993006..993030 (25 bp)
CAAGTCTGTGCAGGAGGCAACATAT
LOC_Os05g02820
Os.3887.1.S1_at--870--1331Chr05:992946..992970 (25 bp)
AGAGAACGCACTGCAGAGCCTAACC
LOC_Os05g02820
Os.3887.1.S1_at--541--4451Chr05:992929..992953 (25 bp)
GCCTAACCCAGGAGAACGACGAGTT
LOC_Os05g02820
Os.3887.1.S1_at--561--2591Chr05:992915..992939 (25 bp)
AACGACGAGTTCAGGTTGCGAGAAG
LOC_Os05g02820
Os.3887.1.S1_at--409--1011Chr05:992903..992927 (25 bp)
AGGTTGCGAGAAGCTGATGCCATGA
LOC_Os05g02820
Os.3887.1.S1_at--118--10051Chr05:992872..992896 (25 bp)
TAGATGAATTGTCTGCCTTGCTTGC
LOC_Os05g02820
Os.3887.1.S1_at--462--7171Chr05:992862..992886 (25 bp)
GTCTGCCTTGCTTGCTGAAGCGATG
LOC_Os05g02820
Target Sequence 
GGTGTACACTGAATCAGCGTGTGCTGAGGCTAGCAAGGCTCTGCATGAGGCAAAGACTGAGAAGGAGAGTCTTAAAGAGA
AACTGATTTACACAGAAGCTGCTGTTGCTGAAGCCAACAAGTCTGTGCAGGAGGCAACATATGAAAATTCACAACTGAAG
GAGCGATTACTAGATAAAGAGAACGCACTGCAGAGCCTAACCCAGGAGAACGACGAGTTCAGGTTGCGAGAAGCTGATGC
CATGAAGAAGATAGATGAATTGTCTGCCTTGCTTGCTGAAGCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis