Browse Element(s) Details


OsAffx.26699.1.S1_s_at

Description tigr:9633.m00188
TID=OsAffx.26699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0274011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein
LOC_Os05g02730NANA5+955957..956777Homeobox domain containing protein
LOC_Os05g02740OsAffx.26699.1.S1_s_at11/115+965458..966245hypothetical protein
LOC_Os05g02740OsAffx.26699.1.S1_at8/115+965458..966245hypothetical protein
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26699.1.S1_s_at--422--151Chr05:966068..966092 (25 bp)
ATTAGCTCCAATGGGTTTCCTGCAA
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--335--4771Chr05:966072..966096 (25 bp)
GCTCCAATGGGTTTCCTGCAAAACA
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--753--7671Chr05:966080..966104 (25 bp)
GGGTTTCCTGCAAAACACTTTCTCA
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--220--2051Chr05:966096..966120 (25 bp)
ACTTTCTCAGTGTGTGTCGGCATCG
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--290--7191Chr05:966111..966135 (25 bp)
GTCGGCATCGGGTGTGGTATCTACA
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--757--491Chr05:966117..966141 (25 bp)
ATCGGGTGTGGTATCTACATTGCGC
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--665--7471Chr05:966122..966146 (25 bp)
GTGTGGTATCTACATTGCGCAGAAC
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--388--3591Chr05:966134..966158 (25 bp)
CATTGCGCAGAACTATGACGTCCCA
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--920--9031Chr05:966137..966161 (25 bp)
TGCGCAGAACTATGACGTCCCAAAC
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--791--5471Chr05:966143..966167 (25 bp)
GAACTATGACGTCCCAAACATGAAG
LOC_Os05g02740
OsAffx.26699.1.S1_s_at--111--5751Chr05:966150..966174 (25 bp)
GACGTCCCAAACATGAAGAAACTTA
LOC_Os05g02740
Target Sequence 
ATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT
ATGACGTCCCAAACATGAAGAAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26699.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis