Browse Element(s) Details


Os.10808.1.S1_at

Description gb:AK110694.1
DB_XREF= gi:32995903
TID=Os.10808.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A08, full insert sequence.
FL= gb:AK110694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0269010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein
LOC_Os05g02730NANA5+955957..956777Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10808.1.S1_at--480--8651Chr05:934557..934581 (25 bp)
TGGGCTTCACCGTGCCAGGCGTCAA
LOC_Os05g02690
Os.10808.1.S1_at--641--10571Chr05:934619..934643 (25 bp)
TTCTACATGCCACACTGCGAGGCGT
LOC_Os05g02690
Os.10808.1.S1_at--940--1971NONE
ACTGCGAGGCGTCACTCTACGATGC
NONE
Os.10808.1.S1_at--270--771Chr05:934698..934722 (25 bp)
ATGTCTGCGTGCTCGGCAACAGCTT
LOC_Os05g02690
Os.10808.1.S1_at--705--5151Chr05:934725..934749 (25 bp)
GCAACTACGCGATCCAGGCGGAGGA
LOC_Os05g02690
Os.10808.1.S1_at--384--6751Chr05:934861..934885 (25 bp)
GTTCAACCGCGCGTTCAACGAAACG
LOC_Os05g02690
Os.10808.1.S1_at--619--4631Chr05:934871..934895 (25 bp)
GCGTTCAACGAAACGAGCTGGCATT
LOC_Os05g02690
Os.10808.1.S1_at--1072--6031Chr05:934954..934978 (25 bp)
GAGATAAGTTCCGAAGTACTCTTCT
LOC_Os05g02690
Os.10808.1.S1_at--368--4091Chr05:934965..934989 (25 bp)
CGAAGTACTCTTCTTAATTTCAGTA
LOC_Os05g02690
Os.10808.1.S1_at--321--1171Chr05:934986..935010 (25 bp)
AGTACTCGTGACTGTAATTGTAAGA
LOC_Os05g02690
Os.10808.1.S1_at--565--9051Chr05:935031..935055 (25 bp)
TGCTTTTGGTGATCAATACTCGATA
LOC_Os05g02690
Target Sequence 
TGGGCTTCACCGTGCCAGGCGTCAACGACGGGTGCCGCCGCCGCGCCGACGAGCCCACCCTCTTCTACATGCCACACTGC
GAGGCGTCACTCTACGATGCCCTCCTCGCCGCCAACTGGGAGCCACCCTCGCAGCTCCGCCATGTCTGCGTGCTCGGCAA
CAGCTTCCGCAACTACGCGATCCAGGCGGAGGAGAACAGATCGGGCCCTGCCGCCAGGGCCAAGCACGTCCTCGCGGCGG
AGCGGTTCGCGTGGGAGGAGCGGGTCAGCGAGAAGGGCGNCGTGGATGACGACGACGACGACNTGTTCAACCGCGCGTTC
AACGAAACGAGCTGGCATTTCTTCGAGGTGGATGACGCCGCCGACTTNGCTNCCGNCGTCGCCTCCACCGGAGGACGGAG
ATAAGTTCCGAAGTACTCTTCTTAATTTCAGTACTCGTGACTGTAATTGTAAGANCATTGTTTGNCCAATTGGATGCTTT
TGGTGATCAATACTCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis