Browse Element(s) Details


OsAffx.14508.1.S1_at

Description tigr:9633.m00183
TID=OsAffx.14508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14508.1.S1_at--68--1431Chr05:905442..905466 (25 bp)
AGAAAGTCGTTGCAGATGATCCATC
LOC_Os05g02650
OsAffx.14508.1.S1_at--1003--8371Chr05:905483..905507 (25 bp)
GGCGAGATCATGTCACAGTCTTACT
LOC_Os05g02650
OsAffx.14508.1.S1_at--443--6591Chr05:905557..905581 (25 bp)
GATTGCCTTGGCTGAGATTGCTGCC
LOC_Os05g02650
OsAffx.14508.1.S1_at--411--6591Chr05:905572..905596 (25 bp)
GATTGCTGCCCAGTTGCATATTGGA
LOC_Os05g02650
OsAffx.14508.1.S1_at--325--7911Chr05:905605..905629 (25 bp)
GGTTGTCAATATCCTTGAGCCTCGG
LOC_Os05g02650
OsAffx.14508.1.S1_at--123--4471Chr05:905623..905643 (21 bp)
GCCTCGGCTTGGAACTATTGTTAAA
LOC_Os05g02650
OsAffx.14508.1.S1_at--426--2891Chr05:906201..906225 (25 bp)
AAGGTGGTCAGCTATACACTCCAGC
LOC_Os05g02650
OsAffx.14508.1.S1_at--523--1471Chr05:906236..906260 (25 bp)
AGAATTACTGCCATGGTCCGTGGTG
LOC_Os05g02650
OsAffx.14508.1.S1_at--529--2891Chr05:906360..906384 (25 bp)
AAGGTTCATTCTTCCAGTCCATTTT
LOC_Os05g02650
OsAffx.14508.1.S1_at--423--8691Chr05:906409..906433 (25 bp)
TGTGCTTGGATCAGTCCGTGCAGGA
LOC_Os05g02650
OsAffx.14508.1.S1_at--197--7531Chr05:906439..906542 (25 bp)
GTGGACACCAGCTGTTTTTGCACAT
LOC_Os05g02650
Target Sequence 
AGAAAGTCGTTGCAGATGATCCATCTCTTATGCTGATCAACGGCGAGATCATGTCACAGTCTTACTGGGACACTGTGACA
GAAGAGATAAATGAGAAGTTGCAGGAGCGCAGCCAGATTGCCTTGGCTGAGATTGCTGCCCAGTTGCATATTGGATCAGA
GCTGGTTGTCAATATCCTTGAGCCTCGGCTTGGAACTATTGTTAAAGGAAGGCTAGAAGGTGGTCAGCTATACACTCCAG
CATATGTCTCAAGAATTACTGCCATGGTCCGTGGTGCCGCTAGGGGTATAACAGTTCCAACAAATTTGCCATCTGTTTGG
AACAGCTTGCAGCTGCAGCTCCAAGAAATGCATGGTGCTAGTGGAGTTTCTGTGGAAGGTTCATTCTTCCAGTCCATTTT
CAATGGCTTACTGAAAGAAGGTGTTGTGCTTGGATCAGTCCGTGCAGGAGTACAGTGGACACCAGCTGTTTTTGCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis