Browse Element(s) Details


OsAffx.26697.1.S1_x_at

Description tigr:9633.m00181
TID=OsAffx.26697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0263011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02570Os.56308.1.S1_at11/115+873017..874596F-box protein interaction domain containing protein, expressed
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26697.1.S1_x_at--300--9171Chr05:897678..897702 (25 bp)
TGCCGATGATGATGCTGTCCTCCAC
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--910--5991Chr05:897791..897815 (25 bp)
GAGAGCGACTTCTCCGTTCTGAGGA
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--917--1631Chr05:897794..897818 (25 bp)
AGCGACTTCTCCGTTCTGAGGAAGG
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--601--9471Chr05:897808..897832 (25 bp)
TCTGAGGAAGGTCCCCACGGGTCCT
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--207--531Chr05:897871..897895 (25 bp)
ATCGACGCCGACTCAGTTCTCCGTT
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--600--9471Chr05:897895..897919 (25 bp)
TCTGAGGAAGGTGCCCACTGGTCCG
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--299--3591Chr05:897951..897975 (25 bp)
CATTGTCGGAGTTCCCGGTTCTGAG
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--298--3591Chr05:898032..898056 (25 bp)
CATTGTCGGAGTTCCCGGTTCTTAG
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--1156--3331Chr05:898107..898131 (25 bp)
CACCGCCATTGACGGAGTTCCCGAT
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--10--4211Chr05:898126..898470 (25 bp)
CCCGATTCTGAGGAAGGTACACCAT
LOC_Os05g02630
OsAffx.26697.1.S1_x_at--1001--7831Chr05:898461..898485 (25 bp)
GGTACACCATAAGGCTTTGGGCATC
LOC_Os05g02630
Target Sequence 
TGCCGATGATGATGCTGTCCTCCACGGCGACGGCGGCGCGCCCCGTCCATGGCGGCCCGCCCGGCGAGCTCCCGCCGATC
ATCATCACAACCCCACCGACGGCGATAAGCGGGGAGAGCGACTTCTCCGTTCTGAGGAAGGTCCCCACGGGTCCTGACCC
CATCACCTCCGACCCGCCTCCGCCGCCGCCGCCATCGACGCCGACTCAGTTCTCCGTTCTGAGGAAGGTGCCCACTGGTC
CGGACCCCATCACCTCCGACCCGCCGCCGCCGCCATTGTCGGAGTTCCCGGTTCTGAGGGAGGTCCCCTCGGGTCCTGAC
CCTATCACCTCCGACCCACCGCCGCCGCCGCCGCCATTGTCGGAGTTCCCGGTTCTTAGGGAGGTCCCCTCGGGTCCTGA
CCCTATCACCTCCGACCCGCCGCCGCCGCCACCGCCATTGACGGAGTTCCCGATTCTGAGGAAGGTACACCATAAGGCTT
TGGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26697.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis