Browse Element(s) Details


Os.49274.1.S1_at

Description gb:AK106866.1
DB_XREF= gi:32992075
TID=Os.49274.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C12, full insert sequence.
FL= gb:AK106866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3455011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g026701/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34530Os.47463.1.S1_x_at6/118+21539771..21543468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34530Os.14491.2.S1_x_at5/118+21539771..21543468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34540NANA8+21546223..21548904transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34550Os.49274.1.S1_at11/118+21567415..21569582Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g34560OsAffx.23616.2.S1_at11/118+21573616..21574363hypothetical protein
LOC_Os08g34570OsAffx.6021.1.S1_at10/118+21575758..21576557D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os08g34580Os.6139.2.S1_s_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g34580Os.6139.1.S1_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49274.1.S1_at--680--1651Chr08:21569043..21569067 (25 bp)
AGCCCCGTCACGGAGTCGGAGTACA
LOC_Os08g34550
Os.49274.1.S1_at--1152--4931Chr08:21569297..21569321 (25 bp)
GCATTCCCGCCATTAGATTGATTCA
LOC_Os08g34550
Os.49274.1.S1_at--571--51Chr08:21569313..21569337 (25 bp)
ATTGATTCATTCATTCACGCGGAGA
LOC_Os08g34550
Os.49274.1.S1_at--755--10811Chr08:21569372..21569396 (25 bp)
TTGTGTTGAACGATCTGTGAAGTGA
LOC_Os08g34550
Os.49274.1.S1_at--224--5931Chr08:21569435..21569459 (25 bp)
GAGCATTGGAAATCTTGTGTCATTC
LOC_Os08g34550
Os.49274.1.S1_at--112--8671Chr08:21569450..21569474 (25 bp)
TGTGTCATTCTGTGTAGCTTGTACT
LOC_Os08g34550
Os.49274.1.S1_at--147--6972Chr08:21569463..21569487 (25 bp)
GTAGCTTGTACTTTGCATTTACTTG
LOC_Os08g34550
Os.49274.1.S1_at--662--4931Chr08:21569477..21569501 (25 bp)
GCATTTACTTGTTTTCAACTGTACA
LOC_Os08g34550
Os.49274.1.S1_at--396--9711Chr08:21569491..21569515 (25 bp)
TCAACTGTACATTGCTCCAGCAGCA
LOC_Os08g34550
Os.49274.1.S1_at--156--5051Chr08:21569510..21569534 (25 bp)
GCAGCAAGGGTTTTCTTCAGGTTCA
LOC_Os08g34550
Os.49274.1.S1_at--676--3451Chr08:21569527..21569551 (25 bp)
CAGGTTCAGGGTAAATTTCTGGTCT
LOC_Os08g34550
Target Sequence 
AGCCCCGTCACGGAGTCGGAGTACAACGTGTCGGCGTGGGACAAGANNGAGAAGAGCGCGAGCGGCAGCGTCGCGGANTG
GGACCTNGAGTCCGCCGCCGCCACGGCGGCCGTCCCCGGCGCAGGCGCCGGCAACGGGCTCAGCTCGAGGGCCGACGAGG
CGCCGTCGTTCGCGCGGCGGACGCTGCTGTGGATCCGAGGNCACCTGTGAAATGATCCATCCATGGAAGCATCATAGCTN
TTCGTTCTTCTTGTGCATTCCCGCCATTAGATTGATTCATTCATTCACGCGGAGAGTGTGGAGTGGAATCGAAGAAATTC
ACGAGAAATTTGTGTTGAACGATCTGTGAAGTGAATACTNCNCGGNAAAGAATTTAACTACTATTGTTTGCAGAGCATTG
GAAATCTTGTGTCATTCTGTGTAGCTTGTACTTTGCATTTACTTGTTTTCAACTGTACATTGCTCCAGCAGCAAGGGTTT
TCTTCAGGTTCAGGGTAAATTTCTGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis