Browse Element(s) Details


Os.31700.2.S1_s_at

Description gb:AK106889.1
DB_XREF= gi:32992098
TID=Os.31700.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A01.22 (P0489A01.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G03, full insert sequence.
FL= gb:AK106889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31700.2.S1_s_at--288--5471Chr05:911663..911687 (25 bp)
GAACTGAAATCCCTGGTCCTGGGCA
LOC_Os05g02650
Os.31700.2.S1_s_at--248--3911Chr05:911675..911699 (25 bp)
CTGGTCCTGGGCACAAGCAAAGAAT
LOC_Os05g02650
Os.31700.2.S1_s_at--187--8091Chr05:911712..911736 (25 bp)
GGAGCTGCCTTGCTAGCTAGACTTA
LOC_Os05g02650
Os.31700.2.S1_s_at--1047--4031Chr05:911770..911794 (25 bp)
CGTTCCTTGCATCCTCTGCGTTGAT
LOC_Os05g02650
Os.31700.2.S1_s_at--233--10571Chr05:911796..911820 (25 bp)
TTCTTTGCTCTATCAGGAAGTAAAA
LOC_Os05g02650
Os.31700.2.S1_s_at--805--1371Chr05:911822..911846 (25 bp)
AGAGCTGGGAAGTGGTCTTCTCTAT
LOC_Os05g02650
Os.31700.2.S1_s_at--1052--8191Chr05:911829..911853 (25 bp)
GGAAGTGGTCTTCTCTATAGATAGA
LOC_Os05g02650
Os.31700.2.S1_s_at--603--5491Chr05:911903..911927 (25 bp)
GAACATCTGATTGACATCTCTCATG
LOC_Os05g02650
Os.31700.2.S1_s_at--763--4951Chr05:911941..911965 (25 bp)
GCATTTCAGCAAATGCTCAGGCTAA
LOC_Os05g02650
Os.31700.2.S1_s_at--114--4791Chr05:911955..911979 (25 bp)
GCTCAGGCTAATTTTAGTGGCCGAA
LOC_Os05g02650
Os.31700.2.S1_s_at--548--1091Chr05:911970..911994 (25 bp)
AGTGGCCGAAGGCATCTGAATTCAC
LOC_Os05g02650
Target Sequence 
GAACTGAAATCCCTGGTCCTGGGCACAAGCAAAGAATGAGCAGCATTCTGGAGCTGCCTTGCTAGCTAGACTTATGTCTG
TGCATATACACTGGGCGGGGCTATCTTCGTTCCTTGCATCCTCTGCGTTGATCTTCTTTGCTCTATCAGGAAGTAAAAAA
GAGCTGGGAAGTGGTCTTCTCTATAGATAGAAGAGAAAATGGAAAAAGGAGAAATGCACCATCGTTTGGGAAGTTGATGT
GAACATCTGATTGACATCTCTCATGTAATTTAGGGCATGCATTTCAGCAAATGCTCAGGCTAATTTTAGTGGCCGAAGGC
ATCTGAATTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31700.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis