Browse Element(s) Details


Os.39957.1.A1_at

Description gb:CB618491
DB_XREF= gi:29613478
DB_XREF=OSIIEa02G19.r
CLONE=OSIIEa02G19
TID=Os.39957.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39957 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49263 (A.thaliana) T49263 hypothetical protein F12M12.190 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g026509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39957.1.A1_at--188--2911Chr05:911396..911420 (25 bp)
AAGGTTTTGGCCGATTATCACAGCA
LOC_Os05g02650
Os.39957.1.A1_at--992--7871Chr05:911398..911422 (25 bp)
GGTTTTGGCCGATTATCACAGCACT
LOC_Os05g02650
Os.39957.1.A1_at--22--4251NONE
CCGTGAAAGTTTTAGCACTACAAGC
NONE
Os.39957.1.A1_at--672--1211Chr05:911436..911455 (20 bp)
AGTTTTAGCACTACAAGCTGCTGCT
LOC_Os05g02650
Os.39957.1.A1_at--310--10331NONE
TTTAGCACTACAAGCTGCTGCTACT
NONE
Os.39957.1.A1_at--166--7611Chr05:911598..911622 (25 bp)
GGGAAGATTGCGCAACTGATCGAAT
LOC_Os05g02650
Os.39957.1.A1_at--795--71Chr05:911604..911628 (25 bp)
ATTGCGCAACTGATCGAATGCTAGA
LOC_Os05g02650
Os.39957.1.A1_at--929--3251Chr05:911610..911634 (25 bp)
CAACTGATCGAATGCTAGAGAGGAA
LOC_Os05g02650
Os.39957.1.A1_at--349--2811Chr05:911637..911661 (25 bp)
AAGATCTGGAAGAGAGGCTGATGCC
LOC_Os05g02650
Os.39957.1.A1_at--612--1351Chr05:911647..911671 (25 bp)
AGAGAGGCTGATGCCAGAACTGAAA
LOC_Os05g02650
Os.39957.1.A1_at--269--6351Chr05:912018..912042 (25 bp)
GATGCTGCTCGGTTTTGTAGCGACA
LOC_Os05g02650
Target Sequence 
AAGGTTTTGGCCGATTATCACAGCACTNCCGTGAAAGTTTTAGCACTACAAGCTGCTGCTACTGAGGATGGGGAAGATTG
CGCAACTGATCGAATGCTAGAGAGGAAGGAAGATCTGGAAGAGAGGCTGATGCCAGAACTGAAATCCCTGGTCCTGGGCA
CAAGCAAAGAATGAGCAGCATTNTGGAGCTGCCTTGCTAGCTAGACTTATGTNTGTGCATATACACTGGGCGGGGCTATC
TTCGTTCCTTGCATCCTCTGCGTTGATNTTCTTTGCTCTATCAGGAAGTAAAAAAGAGCTGGGAAGTGGTCTTCTCTATA
GATAGAAGAGAAAATGGAAAAAGGAGAAATGCNCCATCGTTTGGGAAGTTGATGTGAACATCTGATTGACATCTCTCATG
TAATTTAGTGCATGCATTTCAGCAAATGCTCAGGCTAATTTTAGTGGCCGAAGGCATCTGAATTCACNCCTGAATNTGAA
TCTTGAACTNGATGCTGCTCGGTTTTGTAGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39957.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis