Browse Element(s) Details


Os.53547.1.S1_at

Description gb:AK073223.1
DB_XREF= gi:32983246
TID=Os.53547.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022H22, full insert sequence.
FL= gb:AK073223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0264011/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53547.1.S1_at--393--10551Chr05:903244..903268 (25 bp)
TTCATTGGAATTTCTCGCCGGGAGA
LOC_Os05g02640
Os.53547.1.S1_at--220--6791Chr05:903274..903298 (25 bp)
GTTAGGCCAACTGCATTCTTTTTTA
LOC_Os05g02640
Os.53547.1.S1_at--815--5911Chr05:903524..903548 (25 bp)
GAGCTACTAGGAATGACCGACCGAA
LOC_Os05g02640
Os.53547.1.S1_at--363--4111Chr05:903545..903569 (25 bp)
CGAATGCCTGGTTGCCACCGTGGTG
LOC_Os05g02640
Os.53547.1.S1_at--433--7731Chr05:903566..903590 (25 bp)
GGTGGCTTTGCTCTCTATGAAATGA
LOC_Os05g02640
Os.53547.1.S1_at--967--2111Chr05:903886..903910 (25 bp)
ACAGTAGTTACTCCTTTTCTCTGGA
LOC_Os05g02640
Os.53547.1.S1_at--586--10591Chr05:903902..903926 (25 bp)
TTCTCTGGAGCTGATGCATTTTCTT
LOC_Os05g02640
Os.53547.1.S1_at--1028--10291Chr05:903925..903949 (25 bp)
TTTCCCCTTGTTGCACTGAGAGTTT
LOC_Os05g02640
Os.53547.1.S1_at--200--9891Chr05:904018..904042 (25 bp)
TACATTCTCACTTTGTTGCTTGGAA
LOC_Os05g02640
Os.53547.1.S1_at--445--7071Chr05:904051..904075 (25 bp)
GTAATTGAGACCATCGCACTCGTGA
LOC_Os05g02640
Os.53547.1.S1_at--91--5111Chr05:904066..904090 (25 bp)
GCACTCGTGACATGATTTCTATCTA
LOC_Os05g02640
Target Sequence 
TTCATTGGAATTTCTCGCCGGGAGATGAATGTTAGGCCAACTGCATTCTTTTTTACAAAATGCAACATAGATTCAGGTGG
AGTGCATGAATTATATTCTAGAGCTCAAGATGGTTTTGAATCTACAAAGATGTATGCAGTCTCAGAGGAAGAGCTACTAG
GAATGACCGACCGAATGCCTGGTTGCCACCGTGGTGGCTTTGCTCTCTATGAAATGATGAAGACTGCTGCCAAAAAATCA
TGAAAATGAACAATAGTGATATTGAATTCTTCTCTAATATCATAAAATAAACAGGGAGAGAGATTGGCGTCACAAGAAAA
CAATACAGTAGTTACTCCTTTTCTCTGGAGCTGATGCATTTTCTTTCCCCTTGTTGCACTGAGAGTTTTTCAGTACAAGT
GCGGAAGAAATAAGTTCTTATTTACATTCTCAATTTATTTTTTTATTTTTTTATCCTACATTCTCACTTTGTTGCTTGGA
ATTGATGTTGTAATTGAGACCATCGCACTCGTGACATGATTTCTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis