Browse Element(s) Details


Os.8746.1.S1_at

Description gb:AK068757.1
DB_XREF= gi:32978782
TID=Os.8746.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159H12, full insert sequence.
FL= gb:AK068757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0267011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein
LOC_Os05g02640Os.53547.1.S1_at11/115+900062..904115hydrolase, NUDIX family protein, expressed
LOC_Os05g02650Os.31700.2.S1_s_at11/115+904477..912072expressed protein
LOC_Os05g02650OsAffx.14508.1.S1_at11/115+904477..912072expressed protein
LOC_Os05g02650Os.39957.1.A1_at9/115+904477..912072expressed protein
LOC_Os05g02659NANA5+916299..918515NA
LOC_Os05g02670Os.8746.1.S1_at11/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02670Os.49274.1.S1_at1/115+918520..925034Kinesin motor domain containing protein, expressed
LOC_Os05g02680Os.15787.1.S1_at11/115+925800..930293expressed protein
LOC_Os05g02690Os.10808.1.S1_at10/115+934047..935073expressed protein
LOC_Os05g02700OsAffx.14988.2.S1_x_at11/115+936510..937575hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8746.1.S1_at--715--5431Chr05:924488..924512 (25 bp)
GAACCATCATGTTCGACTCCGAGAA
LOC_Os05g02670
Os.8746.1.S1_at--504--1471Chr05:924509..924533 (25 bp)
AGAAGGCGGCAAATCGACCTGCCAA
LOC_Os05g02670
Os.8746.1.S1_at--744--5831Chr05:924524..924548 (25 bp)
GACCTGCCAAGCATGGAATCCATTG
LOC_Os05g02670
Os.8746.1.S1_at--371--3571Chr05:924544..924568 (25 bp)
CATTGAGCAGTTGCGAACCCCGGAT
LOC_Os05g02670
Os.8746.1.S1_at--592--2611Chr05:924559..924583 (25 bp)
AACCCCGGATTACGATGAGCTTCTC
LOC_Os05g02670
Os.8746.1.S1_at--413--2251Chr05:924584..924608 (25 bp)
AAATCATTCCGAGAGTCGAGGGCGA
LOC_Os05g02670
Os.8746.1.S1_at--1038--9011Chr05:924651..924675 (25 bp)
TGCAAGAAGCTACACCACCATCAAT
LOC_Os05g02670
Os.8746.1.S1_at--377--4071Chr05:924684..924708 (25 bp)
CGAGAGCTCCTCTTATAGCAAGAAA
LOC_Os05g02670
Os.8746.1.S1_at--1074--7271Chr05:924786..924810 (25 bp)
GTGCCATTCGATTTATTGCTGCTGT
LOC_Os05g02670
Os.8746.1.S1_at--372--6151Chr05:924823..924847 (25 bp)
GAGGTCTGAAGCTGATCTGTTTGTA
LOC_Os05g02670
Os.8746.1.S1_at--787--1271Chr05:924963..924987 (25 bp)
AGATAATCTTCCATGCTTTGCTGCA
LOC_Os05g02670
Target Sequence 
GAACCATCATGTTCGACTCCGAGAAGGCGGCAAATCGACCTGCCAAGCATGGAATCCATTGAGCAGTTGCGAACCCCGGA
TTACGATGAGCTTCTCAAATCATTCCGAGAGTCGAGGGCGAGTTTGAAGCAGGCAAATGGAGACATGAAGCATTTCTTAG
AGGTGCAAGAAGCTACACCACCATCAATCACAGACCCGAGAGCTCCTCTTATAGCAAGAAATTAGATTTATAGAGTGAAT
GTACAAAAGGAACAAATTGTTTAGCTTTGATTTTTGGGGTATTGATTTACTGTTGATAGTGCCATTCGATTTATTGCTGC
TGTTGGTTGGGATGGGAGGTCTGAAGCTGATCTGTTTGTAGAGATCAGTAGAAAGGCATGTGTATTTACTACTGCATAAT
TGAGGATAATGTTAGCTCTAGTGTAATATATATCCACACAGGTAACAATGACAAGTGCTAGTACAGATTTGACTCAGATA
ATCTTCCATGCTTTGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis