Browse Element(s) Details


Os.56308.1.S1_at

Description gb:AK109828.1
DB_XREF= gi:32995037
TID=Os.56308.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-B10, full insert sequence.
FL= gb:AK109828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0257011/11F-box protein interaction domain containing protein, expressed
LOC_Os05g025403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed
LOC_Os05g02540Os.56308.1.S1_at3/115+861727..862626hypothetical protein
LOC_Os05g02550NANA5+863060..864028F-box domain containing protein
LOC_Os05g02560NANA5+867628..869531expressed protein
LOC_Os05g02570Os.56308.1.S1_at11/115+873017..874596F-box protein interaction domain containing protein, expressed
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein
LOC_Os05g02600OsAffx.14506.1.S1_at11/115+883935..884750hypothetical protein
LOC_Os05g02610OsAffx.14507.1.S1_at11/115+887693..888551hypothetical protein
LOC_Os05g02620OsAffx.26696.1.S1_at11/115+891039..891389hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_x_at11/115+897617..898524hypothetical protein
LOC_Os05g02630OsAffx.26697.1.S1_at10/115+897617..898524hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56308.1.S1_at--263--9532Chr05:862136..862160 (25 bp)
TCTACGGGCTGTTCACGTGCAGCGA
LOC_Os05g02540
Os.56308.1.S1_at--1078--9132Chr05:862193..862217 (25 bp)
TGCGTTGCTCCATCTACCTGAATAG
LOC_Os05g02540
Os.56308.1.S1_at--604--452Chr05:862204..862228 (25 bp)
ATCTACCTGAATAGGCTGCCGCGAG
LOC_Os05g02540
Os.56308.1.S1_at--940--8371Chr05:873407..873431 (25 bp)
GGCGCCACGAGGTGTTCGCCTACGA
LOC_Os05g02570
Os.56308.1.S1_at--715--4051Chr05:873334..873358 (25 bp)
CGATGTGCCGAATGACTGCCGCGAG
LOC_Os05g02570
Os.56308.1.S1_at--1028--3911Chr05:873244..873268 (25 bp)
CGGCGAGAGGATGCTTTTTGTGAAC
LOC_Os05g02570
Os.56308.1.S1_at--1101--10791Chr05:873227..873251 (25 bp)
TTGTGAACACGGGACGCCGCGGCAA
LOC_Os05g02570
Os.56308.1.S1_at--511--9711Chr05:873194..873218 (25 bp)
TCAAGCGAGAGGTGCCCGTCGAGTA
LOC_Os05g02570
Os.56308.1.S1_at--1148--1631Chr05:873159..873183 (25 bp)
AGCGATCGTCGTTTCAATGTATTTT
LOC_Os05g02570
Os.56308.1.S1_at--249--7951Chr05:873130..873154 (25 bp)
GGATTTGGCCACGATGGCTGCCCAA
LOC_Os05g02570
Os.56308.1.S1_at--523--8331Chr05:873115..873139 (25 bp)
GGCTGCCCAAATTTAGTTGATACTA
LOC_Os05g02570
Target Sequence 
TCTACGGGCTGTTCACGTGCAGCGAGCCCTCGGCGTCGCCGTCGCCGTCGTGGTCGGTGCGTTGCTCCATCTACCTGAAT
AGGCTGCCGCGAGAGGTGAGCGACGAGCTGATGGAGGAGCGCGTGATCGTGCCGCTCTGCACCGCCGGAGGCAGGATCCT
GCTCGCCACGGGGCGCCACGAGGTGTTCGCCTACGACGCCGGCCGGAACGCCGTCGAGCGCGTGTTCCGCATGCAGGAGT
TCGTCGATGTGCCGAATGACTGCCGCGAGGCTCGCCTGCTGCTCAGCGTTGGCCTCCACGACGAATGCATCGCCGACCTT
CACCCGGGCGCCGGCGGCGAGAGGATGCTTTTTGTGAACACGGGACGCCGCGGCAACACGGTGGTCAAGCGAGAGGTGCC
CGTCGAGTACCACGACGACAGCGATCGTCGTTTCAATGTATTTTTCAAGGATTTGGCCACGATGGCTGCCCAAATTTAGT
TGATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis