Browse Element(s) Details


Os.9285.1.S1_s_at

Description gb:AK069009.1
DB_XREF= gi:32979033
TID=Os.9285.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002J15, full insert sequence.
FL= gb:AK069009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0251010/11Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02460OsAffx.26694.1.S1_at11/115+819840..820509hypothetical protein
LOC_Os05g02470OsAffx.14504.1.S1_at10/115+823531..825261hypothetical protein
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed
LOC_Os05g02540Os.56308.1.S1_at3/115+861727..862626hypothetical protein
LOC_Os05g02550NANA5+863060..864028F-box domain containing protein
LOC_Os05g02560NANA5+867628..869531expressed protein
LOC_Os05g02570Os.56308.1.S1_at11/115+873017..874596F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563molecular_functionbeta-N-acetylhexosaminidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9285.1.S1_s_at--428--3411Chr05:843414..843557 (25 bp)
CAGCAGCAGAGCGTATGTGGAGTCA
LOC_Os05g02510
Os.9285.1.S1_s_at--821--1211Chr05:843390..843414 (25 bp)
AGTTAGAGGCCATATCTGCCCAAGA
LOC_Os05g02510
Os.9285.1.S1_s_at--958--211Chr05:843379..843403 (25 bp)
ATATCTGCCCAAGACCTGGAAACAA
LOC_Os05g02510
Os.9285.1.S1_s_at--40--8531Chr05:843363..843387 (25 bp)
TGGAAACAACCGTCTTGGCTCGGTT
LOC_Os05g02510
Os.9285.1.S1_s_at--89--9591Chr05:843351..843375 (25 bp)
TCTTGGCTCGGTTACACTATTTCAG
LOC_Os05g02510
Os.9285.1.S1_s_at--385--7891Chr05:843342..843366 (25 bp)
GGTTACACTATTTCAGATGCCTGCT
LOC_Os05g02510
Os.9285.1.S1_s_at--707--3071Chr05:843316..843340 (25 bp)
AATCACCGTGGAATCGCTGCAGCTC
LOC_Os05g02510
Os.9285.1.S1_s_at--899--3431Chr05:843291..843315 (25 bp)
CAGTCACAAACTCTTATGCTCGGCG
LOC_Os05g02510
Os.9285.1.S1_s_at--603--3171Chr05:843260..843284 (25 bp)
AATTGGTCCTGGTTCATGCTTCATT
LOC_Os05g02510
Os.9285.1.S1_s_at--607--6851Chr05:843114..843138 (25 bp)
GTTTGCATTACATTACCTATCACAC
LOC_Os05g02510
Os.9285.1.S1_s_at--164--1171Chr05:843032..843056 (25 bp)
AAATAAAACTGCAGAGCCGTTCCTT
NONE
Target Sequence 
CAGCAGCAGAGCGTATGTGGAGTCAGTTAGAGGCCATATCTGCCCAAGACCTGGAAACAACCGTCTTGGCTCGGTTACAC
TATTTCAGATGCCTGCTGAATCACCGTGGAATCGCTGCAGCTCCAGTCACAAACTCTTATGCTCGGCGTCCCCCAATTGG
TCCTGGTTCATGCTTCATTCAGTAAACAGGGAGCTGCAGAGCAAAGATAGGCATAAGAGGGGTATTTGCCTCCATACACC
TTCCACACTTCAGACAAAAATGGTATCTTGTCAATTTTAGTGTACTGTTTCTGTATGTTTGTTTGCATTACATTACCTAT
CACACGGATGTTTGACAATAAAATTTTATAGTCCCTNNTNATGTATTTTCGCCCTAAGTTTCAAATAAAACTGCAGAGCC
GTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9285.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis