Browse Element(s) Details


Os.28047.1.S1_at

Description gb:AK121775.1
DB_XREF= gi:37991398
TID=Os.28047.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092N18, full insert sequence.
FL= gb:AK121775.1 gb:AK058320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0252011/11legumin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed
LOC_Os05g02540Os.56308.1.S1_at3/115+861727..862626hypothetical protein
LOC_Os05g02550NANA5+863060..864028F-box domain containing protein
LOC_Os05g02560NANA5+867628..869531expressed protein
LOC_Os05g02570Os.56308.1.S1_at11/115+873017..874596F-box protein interaction domain containing protein, expressed
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28047.1.S1_at--494--8431Chr05:851818..851842 (25 bp)
GGCCTGCAGTGGTTCTCCATTATCA
LOC_Os05g02520
Os.28047.1.S1_at--725--2371Chr05:851511..851532 (22 bp)
AAACCCGATCTTCAGTCACCTGGCG
LOC_Os05g02520
Os.28047.1.S1_at--1145--5391Chr05:851412..851436 (25 bp)
GAAGCTGTTCCGGTCCAAAAGGATC
LOC_Os05g02520
Os.28047.1.S1_at--994--6371Chr05:851391..851415 (25 bp)
GATCGACTCGGAGATCTTCTTCGCG
LOC_Os05g02520
Os.28047.1.S1_at--689--8911Chr05:851360..851384 (25 bp)
TGAGCAGCTTCCCTTTGCCATTGCG
LOC_Os05g02520
Os.28047.1.S1_at--170--7231Chr05:851333..851357 (25 bp)
GTCGCGTCGGTGTCGTCTTAAATTA
LOC_Os05g02520
Os.28047.1.S1_at--1069--6011Chr05:851274..851298 (25 bp)
GAGATGTTACTACCTTCTGTCAGTC
LOC_Os05g02520
Os.28047.1.S1_at--319--9471Chr05:851259..851283 (25 bp)
TCTGTCAGTCTTATGCTATTGCGGT
LOC_Os05g02520
Os.28047.1.S1_at--948--4671Chr05:851239..851263 (25 bp)
GCGGTTGAACTGTGGTGATTCGCCA
LOC_Os05g02520
Os.28047.1.S1_at--584--7751Chr05:851226..851250 (25 bp)
GGTGATTCGCCACTTAAAATTCTAT
LOC_Os05g02520
Os.28047.1.S1_at--1032--10171Chr05:851204..851228 (25 bp)
TATTCTATTCGAGAGTGCCTTCTGG
LOC_Os05g02520
Target Sequence 
GGCCTGCAGTGGTTCTCCATTATCACCACACCAAACCCGATCTTCAGTCACCTGGCGGGGAAGACGTCGGTGTGGAAGGC
GATCTCGCCGGAGGTGCTGGAGGCGTCGTTCAACGCGACGCCGGAGATGGAGAAGCTGTTCCGGTCCAAAAGGATCGACT
CGGAGATCTTCTTCGCGCCCAACTGAGCAGCTTCCCTTTGCCATTGCGTCGTCGCGTCGGTGTCGTCTTAAATTAGGATT
AAGTCATTAATAATTTCATCTCTTATCATGAGATGTTACTACCTTCTGTCAGTCTTATGCTATTGCGGTTGAACTGTGGT
GATTCGCCACTTAAAATTCTATTCTATTCGAGAGTGCCTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis