Browse Element(s) Details


Os.12706.1.S1_at

Description gb:AY074786.1
DB_XREF= gi:28192424
GEN=DHAR
TID=Os.12706.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12706 (NCBI UniGene Cluster)
DEF=Oryza sativa dehydroascorbate reductase (DHAR) mRNA, complete cds.
PROD=dehydroascorbate reductase
FL= gb:AK070895.1 gb:AB037970.1 gb:AY074786.1 gb:AK061836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0253011/11dehydroascorbate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed
LOC_Os05g02540Os.56308.1.S1_at3/115+861727..862626hypothetical protein
LOC_Os05g02550NANA5+863060..864028F-box domain containing protein
LOC_Os05g02560NANA5+867628..869531expressed protein
LOC_Os05g02570Os.56308.1.S1_at11/115+873017..874596F-box protein interaction domain containing protein, expressed
LOC_Os05g02580Os.8378.1.S1_at11/115+876879..881081expressed protein
LOC_Os05g02590OsAffx.26695.1.S1_at11/115+881497..882717Transferase family protein
LOC_Os05g02590OsAffx.18024.1.S1_x_at1/115+881497..882717Transferase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0005739cellular_componentmitochondrion
GO:0045174molecular_functionglutathione dehydrogenase (ascorbate) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12706.1.S1_at--567--471Chr05:855763..856131 (25 bp)
ATCTGAAAGCTCATGGCCCCTTTAT
LOC_Os05g02530
Os.12706.1.S1_at--443--5351Chr05:855651..855675 (25 bp)
GAAGATCCCGGAAGACCTAACCAAT
LOC_Os05g02530
Os.12706.1.S1_at--254--6751Chr05:855530..855650 (25 bp)
GTTCATGCTTACACAGAGGCTCTGT
LOC_Os05g02530
Os.12706.1.S1_at--88--1331Chr05:855516..855538 (23 bp)
AGAGGCTCTGTTTAGCCGCGAATCT
LOC_Os05g02530
Os.12706.1.S1_at--402--5091Chr05:855465..855489 (25 bp)
GCACCTGATTGCTGGATGGGCACCA
LOC_Os05g02530
Os.12706.1.S1_at--1014--1111Chr05:855438..855462 (25 bp)
AGTGAATGCGTAAGAGCCTGCCCTT
LOC_Os05g02530
Os.12706.1.S1_at--214--10431Chr05:855415..855439 (25 bp)
TTATGCTCTGGTGCTGCTTGGACAC
LOC_Os05g02530
Os.12706.1.S1_at--8--5651Chr05:855395..855419 (25 bp)
GACACCATGCTGTTTATCTGATCGG
LOC_Os05g02530
Os.12706.1.S1_at--426--9911Chr05:855344..855368 (25 bp)
TACTCTTGTGTAGCTTGGGTGCATG
LOC_Os05g02530
Os.12706.1.S1_at--643--1671Chr05:855301..855325 (25 bp)
AGCCTCATCCGTTGAGTACCTTGAT
LOC_Os05g02530
Os.12706.1.S1_at--881--7171Chr05:855211..855235 (25 bp)
GTCGGTTTGGCCTTATGTTCAACTA
LOC_Os05g02530
Target Sequence 
ATCTGAAAGCTCATGGCCCCTTTATCAACGGGCAGAACATTTCAGCTGCTGACCTTAGCCTGGCACCAAAGCTCTACCAT
CTCCAGGTTGCTCTGGAGCATTTCAAAGGCTGGAAGATCCCGGAAGACCTAACCAATGTTCATGCTTACACAGAGGCTCT
GTTTAGCCGCGAATCTTTNCATCAAGACGAAGGCAGCTAAGGAGCACCTGATTGCTGGATGGGCACCAAAAGTGAATGCG
TAAGAGCCTGCCCTTATGCTCTGGTGCTGCTTGGACACCATGCTGTTTATCTGATCGGTCCATGTCAGTGGTGGGCACTA
CTACTACTCTTGTGTAGCTTGGGTGCATGATTGGGTTGGAATAATGTAGCCTCATCCGTTGAGTACCTTGATATGGTTGT
TGCAAGTGTGCACTTTTTCTATGAACTATCTCCTGCTGGCTTAAGTCGAAACCGTGGGTCGGTTTGGCCTTATGTTCAAC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis