Browse Element(s) Details


Os.7790.1.S1_at

Description gb:AK070819.1
DB_XREF= gi:32980842
TID=Os.7790.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065F02, full insert sequence.
FL= gb:AK070819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0249011/11Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02440NANA5+809476..809823hypothetical protein
LOC_Os05g02450Os.54606.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02450Os.56980.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02460OsAffx.26694.1.S1_at11/115+819840..820509hypothetical protein
LOC_Os05g02470OsAffx.14504.1.S1_at10/115+823531..825261hypothetical protein
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os05g02520Os.28047.1.S1_at11/115+851191..854118legumin, putative, expressed
LOC_Os05g02530Os.12706.1.S1_at11/115+854974..858517dehydroascorbate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005354molecular_functiongalactose transporter activity
GO:0015165molecular_functionpyrimidine nucleotide sugar transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7790.1.S1_at--861--7411Chr05:835324..835346 (23 bp)
GTGTTGCAACAGCTAGTCAGTTCTT
LOC_Os05g02490
Os.7790.1.S1_at--995--6451Chr05:835392..835502 (25 bp)
GATAATGACGACTAGACAGCTGGTG
LOC_Os05g02490
Os.7790.1.S1_at--655--10231Chr05:835510..835534 (25 bp)
TATTGTCCTGTGTGTGGTTTGTACA
LOC_Os05g02490
Os.7790.1.S1_at--252--8591Chr05:835524..835548 (25 bp)
TGGTTTGTACATCCTCTTAGCTGGA
LOC_Os05g02490
Os.7790.1.S1_at--632--11Chr05:835657..835681 (25 bp)
ATTGTATTCGGAGCCCTGTACACAA
LOC_Os05g02490
Os.7790.1.S1_at--187--2611Chr05:835723..835747 (25 bp)
AACCCGTCGAATTCTGCTAACAACA
LOC_Os05g02490
Os.7790.1.S1_at--982--2731Chr05:835764..835788 (25 bp)
AAGAAGAGATCCACCCCATTTGTTG
LOC_Os05g02490
Os.7790.1.S1_at--976--271Chr05:835947..835971 (25 bp)
ATAGTTGAGGAAGCCCAGCCTGCTG
LOC_Os05g02490
Os.7790.1.S1_at--854--5671Chr05:835982..836006 (25 bp)
GACTTGGCTGCCGTTTTTGAGGCTT
LOC_Os05g02490
Os.7790.1.S1_at--984--10371Chr05:835996..836020 (25 bp)
TTTTGAGGCTTTATCCAGGCCGTTC
LOC_Os05g02490
Os.7790.1.S1_at--218--10591Chr05:836018..836042 (25 bp)
TTCTCTGCACTGCAGGTGCTTGATA
LOC_Os05g02490
Target Sequence 
GTGTTGCAACAGCTAGTCAGTTCTTCATATCGNNCACCATACGAACATTTGGGNCTCTCACATTTGCTACGATAATGACG
ACTAGACAGCTGGTGAGTATATTATTGTCCTGTGTGTGGTTTGTACATCCTCTTAGCTGGATGCAGTGGGTTGGCGCCGC
CATTGTATTCGGAGCCCTGTACACAAAAAGCTTCTTGAGAAGTAAACCGCAGAAGCCAGCCGCTGCAAACCCGTCGAATT
CTGCTAACAACAGCTGACCAAACGACATAAGAAGAGATCCACCCCATTTGTTGCCTTGCTGCACCGGACCAAACACCAAA
GTCTTGGTGTGAGATATGAATGAAGACATCCTGATGAGTTAACTGGACGACAGGTTGTAGGGTTGTGTTAACATGGAGCT
CAGAAGGCTCAAGGGTTATTAGGCTATTAGCTTAGGAGGATCCAGTGGCAAATAGTTGAGGAAGCCCAGCCTGCTGGTAG
TGAAATGACTTGGCTGCCGTTTTTGAGGCTTTATCCAGGCCGTTCTCTGCACTGCAGGTGCTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis