Browse Element(s) Details


Os.54606.1.S1_at

Description gb:AK106226.1
DB_XREF= gi:32991435
TID=Os.54606.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A05, full insert sequence.
FL= gb:AK106226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0245011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02440NANA5+809476..809823hypothetical protein
LOC_Os05g02450Os.54606.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02450Os.56980.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02460OsAffx.26694.1.S1_at11/115+819840..820509hypothetical protein
LOC_Os05g02470OsAffx.14504.1.S1_at10/115+823531..825261hypothetical protein
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54606.1.S1_at--39--2691Chr05:815791..815815 (25 bp)
AAGCGGCATCGGCTGCACTGACCGT
LOC_Os05g02450
Os.54606.1.S1_at--152--7251Chr05:815814..815838 (25 bp)
GTCCGATCCGATGCTGTCGTGTGCA
LOC_Os05g02450
Os.54606.1.S1_at--898--8111Chr05:815846..815870 (25 bp)
GGACGGCTGTCGTGCGTCCAGCTTA
LOC_Os05g02450
Os.54606.1.S1_at--549--11Chr05:815861..815885 (25 bp)
GTCCAGCTTACGACCGGTTGGTTCG
LOC_Os05g02450
Os.54606.1.S1_at--1092--3871Chr05:815910..815934 (25 bp)
CTGTCAGTGACAAGGGATTGCCATT
LOC_Os05g02450
Os.54606.1.S1_at--613--7911Chr05:815924..815948 (25 bp)
GGATTGCCATTGAGGGCCCACTTGT
LOC_Os05g02450
Os.54606.1.S1_at--1017--3611Chr05:815944..815968 (25 bp)
CTTGTCAGTGACATGTGATTACCAT
LOC_Os05g02450
Os.54606.1.S1_at--436--8831Chr05:815959..815983 (25 bp)
TGATTACCATTGAGGGCGAGCGAAT
LOC_Os05g02450
Os.54606.1.S1_at--507--4611Chr05:815974..815998 (25 bp)
GCGAGCGAATATTTGCATGAACCAA
LOC_Os05g02450
Os.54606.1.S1_at--332--10031Chr05:816055..816079 (25 bp)
TAGAGTTGATCCTGCTTAATTATGA
LOC_Os05g02450
Os.54606.1.S1_at--1081--9731Chr05:816107..816131 (25 bp)
TAATTAAACCTGTTCCTTGCTCTCT
LOC_Os05g02450
Target Sequence 
AAGCGGCATCGGCTGCACTGACCGTCCGATCCGATGCTGTCGTGTGCACGGGATCGGACGGCTGTCGTGCGTCCAGCTTA
CGACCGGTTGGTTCGTTAGGTGGTGGTCGTGTGGCCCACCTGTCAGTGACAAGGGATTGCCATTGAGGGCCCACTTGTCA
GTGACATGTGATTACCATTGAGGGCGAGCGAATATTTGCATGAACCAAAAACATTAGTAGATGCTAACTGCTTAGTGTTA
AGAGTCGTCATGATAGAATTATTATAGAGTTGATCCTGCTTAATTATGATGTAAATAGGAAGTTAGTATCAAATTTTAAT
TAAACCTGTTCCTTGCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis