Browse Element(s) Details

OsAffx.15984.1.S1_x_at

Description

tigr:9634.m04720
TID=OsAffx.15984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48330	11/11	Exo70 exocyst complex subunit family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48300	Os.39552.1.A1_s_at	11/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48300	Os.34372.1.S1_at	10/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48310	NA	NA	6	+	29210703..29211002	cleavage stimulation factor, putative
LOC_Os06g48320	Os.7620.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48320	Os.51280.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_x_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	Os.15740.1.A1_at	9/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.11567.1.S1_s_at	1/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48340	NA	NA	6	+	29233082..29233404	hypothetical protein
LOC_Os06g48350	Os.8401.2.S1_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_a_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	OsAffx.14511.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48360	NA	NA	6	+	29241626..29242393	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48370	NA	NA	6	+	29245546..29251252	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48380	NA	NA	6	+	29254940..29260646	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006904	biological_process	vesicle docking during exocytosis
GO:0000145	cellular_component	exocyst
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15984.1.S1_x_at--797--563	1	Chr06:29231879..29231903 (25 bp)	GACACTGTCGTATCTCTTCATGATG	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--319--851	1	Chr06:29231913..29231937 (25 bp)	TGGCACTTCTTCAAGCACCTGAAAG	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--310--833	1	Chr06:29231971..29231995 (25 bp)	GGCTCCGGGAGCATGAACAGTACAA	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--184--817	1	Chr06:29232033..29232057 (25 bp)	GGAACACTTGCACCGCTGTTGAGCA	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--409--975	1	Chr06:29232067..29232091 (25 bp)	TAATCTTGTTCTCCAAAGGCCGGGC	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--299--503	1	Chr06:29232113..29232137 (25 bp)	GCAGCGACTTAAATCGTTCAATGCA	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--407--767	1	Chr06:29232187..29232211 (25 bp)	GGGATTTGCAACAGAAGACCTGCCA	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--521--535	1	Chr06:29232200..29232224 (25 bp)	GAAGACCTGCCACCTTGTGGTGCAG	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--54--29	1	Chr06:29232228..29232252 (25 bp)	ATAGTGCCTGTATACCGGAGCTTCA	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--1024--79	1	Chr06:29232262..29232286 (25 bp)	ATGGGCCGCTTGTCGATCAGCAGGA	LOC_Os06g48330
OsAffx.15984.1.S1_x_at--524--819	1	Chr06:29232375..29232399 (25 bp)	GGAAGCTTCCAGATCAGACACTCAA	LOC_Os06g48330

Target Sequence

GACACTGTCGTATCTCTTCATGATGAACACGCACTGGCACTTCTTCAAGCACCTGAAAGGTACCAAGATGGGTGAGATCT
TAGGTGATGAATGGCTCCGGGAGCATGAACAGTACAAGGATTACTACTCAGCAGTGTTTTTGAGGGAGAGCTGGGGAACA
CTTGCACCGCTGTTGAGCAGGGAGGGTATAATCTTGTTCTCCAAAGGCCGGGCTACAGCAAGAGATTTAGTGAAGCAGCG
ACTTAAATCGTTCAATGCAAACTTTGATGAGATGTATCAGAAGCAATCTGCGTGGATCATATCAGATAGGGATTTGCAAC
AGAAGACCTGCCACCTTGTGGTGCAGGCTATAGTGCCTGTATACCGGAGCTTCATGCAAAACTATGGGCCGCTTGTCGAT
CAGCAGGATGCCAGTGCAAACAAGTATGTGAAGTTCACTGCTGAAGGTCTAGATAAGATGCTCAGCACACTCTTCTTGCC
CAAGCCAAGGAGAGCTGGAAGCTTCCAGATCAGACACTCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis