Browse Element(s) Details

Os.8401.2.S1_at

Description

gb:CB659931
DB_XREF= gi:29663656
DB_XREF=OSJNEd01E14.r
CLONE=OSJNEd01E14
TID=Os.8401.2
CNT=39
FEA=EST
TIER=Stack
STK=8
UG=Os.8401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L01, full insert sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48350	11/11	Eukaryotic translation initiation factor 5, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48300	Os.39552.1.A1_s_at	11/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48300	Os.34372.1.S1_at	10/11	6	+	29207091..29209949	Protein phosphatase 2C containing protein, expressed
LOC_Os06g48310	NA	NA	6	+	29210703..29211002	cleavage stimulation factor, putative
LOC_Os06g48320	Os.7620.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48320	Os.51280.1.S1_at	11/11	6	+	29214411..29217962	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_x_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.15984.1.S1_at	11/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	Os.15740.1.A1_at	9/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48330	OsAffx.11567.1.S1_s_at	1/11	6	+	29230227..29232940	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g48340	NA	NA	6	+	29233082..29233404	hypothetical protein
LOC_Os06g48350	Os.8401.2.S1_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_a_at	11/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	Os.8401.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	OsAffx.14511.1.S1_at	1/11	6	+	29233812..29237559	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48360	NA	NA	6	+	29241626..29242393	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48370	NA	NA	6	+	29245546..29251252	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48380	NA	NA	6	+	29254940..29260646	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006446	biological_process	regulation of translational initiation
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0003743	molecular_function	translation initiation factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8401.2.S1_at--492--1061	1	Chr06:29234396..29234420 (25 bp)	TTCGGTGCCAAGTCTAGCCCTGAAG	LOC_Os06g48350
Os.8401.2.S1_at--1065--727	1	Chr06:29234392..29234416 (25 bp)	GTGCCAAGTCTAGCCCTGAAGCTGT	LOC_Os06g48350
Os.8401.2.S1_at--107--407	1	Chr06:29234202..29234226 (25 bp)	CGAGGAAGAGTGACGCGTCCAACCT	LOC_Os06g48350
Os.8401.2.S1_at--417--941	1	Chr06:29234148..29234172 (25 bp)	TCGTCTTTTGAGTATTCGTTCGCCA	LOC_Os06g48350
Os.8401.2.S1_at--1049--9	1	Chr06:29234135..29234159 (25 bp)	ATTCGTTCGCCATGAATATTTCCAG	LOC_Os06g48350
Os.8401.2.S1_at--826--311	1	Chr06:29234121..29234145 (25 bp)	AATATTTCCAGTTCGTATCGTCGTG	LOC_Os06g48350
Os.8401.2.S1_at--195--123	1	Chr06:29234112..29234136 (25 bp)	AGTTCGTATCGTCGTGTGCTTTTCC	LOC_Os06g48350
Os.8401.2.S1_at--465--747	1	Chr06:29234099..29234123 (25 bp)	GTGTGCTTTTCCTACGAGTTATGAG	LOC_Os06g48350
Os.8401.2.S1_at--701--429	1	Chr06:29234089..29234113 (25 bp)	CCTACGAGTTATGAGTGCTTCGAGT	LOC_Os06g48350
Os.8401.2.S1_at--904--607	1	Chr06:29234068..29234092 (25 bp)	GAGTTTGTTCGTGTGTCCTGTGCGC	LOC_Os06g48350
Os.8401.2.S1_at--958--745	1	Chr06:29234056..29234080 (25 bp)	GTGTCCTGTGCGCTTGCTTATCTGT	LOC_Os06g48350

Target Sequence

TTCGGTGCCAAGTCTAGCCCTGAAGCTGTGAAGGAGGTGCCGATTGTTCTCAAGGCCCTGTATGATGGGGACATCCTGGA
TGAAGAAGTGATAACTCAGTGGTACAATGAATCTGTNGCTGCTGGCAAGGAGTCCCAGGTGGTGAAGAATGCCAAACCAT
TCGTGGAGTGGCTCCAGAGCGCGGATTCTGAATCCGAGGAAGAGTGACGCGTCCAACCTNGTCCCCAATCATCGCCTACT
TCGCNTTATCGTCTTTTGAGTATTCGTTCGCCATGAATATTTCCAGTTCGTATCGTCGTGTGCTTTTCCTACGAGTTATG
AGTGCTTCGAGTTTGTTCGTGTGTCCTGTGCGCTTGCTTATCTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis