Browse Element(s) Details

OsAffx.28169.2.S1_at

Description

tigr:9634.m04711
TID=OsAffx.28169.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=mitochondrial protein, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48240	11/11	ATPase, AAA family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48200	Os.22839.1.S2_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200	Os.22839.1.S1_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_s_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48220	NA	NA	6	+	29170336..29171172	hypothetical protein
LOC_Os06g48230	Os.52719.1.S1_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230	Os.8227.1.A1_s_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48240	OsAffx.28169.2.S1_at	11/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48240	OsAffx.25760.1.S1_x_at	1/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48250	OsAffx.28169.1.S1_at	11/11	6	+	29183400..29185123	ATPase, AAA family protein, expressed
LOC_Os06g48260	NA	NA	6	+	29186079..29186282	hypothetical protein
LOC_Os06g48270	OsAffx.29680.1.S1_at	4/11	6	+	29188145..29190042	hypothetical protein
LOC_Os06g48280	OsAffx.28171.1.S1_at	11/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48280	OsAffx.24197.1.S1_x_at	1/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48290	OsAffx.15983.1.S1_at	10/11	6	+	29197272..29198358	Homeobox domain containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28169.2.S1_at--968--183	1	Chr06:29180234..29180258 (25 bp)	ACGCGGCCCAAGTCGGTCATCGTCG	LOC_Os06g48240
OsAffx.28169.2.S1_at--732--189	1	Chr06:29180265..29180289 (25 bp)	ACGTCGACTGCTCCCTCGGACTGTT	LOC_Os06g48240
OsAffx.28169.2.S1_at--131--937	1	Chr06:29180268..29180292 (25 bp)	TCGACTGCTCCCTCGGACTGTTCGA	LOC_Os06g48240
OsAffx.28169.2.S1_at--812--903	1	Chr06:29180273..29180297 (25 bp)	TGCTCCCTCGGACTGTTCGACCGGA	LOC_Os06g48240
OsAffx.28169.2.S1_at--1014--943	1	Chr06:29180280..29180304 (25 bp)	TCGGACTGTTCGACCGGACGCGCGC	LOC_Os06g48240
OsAffx.28169.2.S1_at--1113--577	1	Chr06:29180348..29180372 (25 bp)	GACGAGCAGCGCAACCGTGCGATGC	LOC_Os06g48240
OsAffx.28169.2.S1_at--848--507	1	Chr06:29180353..29180377 (25 bp)	GCAGCGCAACCGTGCGATGCTGCAA	LOC_Os06g48240
OsAffx.28169.2.S1_at--1131--411	1	Chr06:29180357..29180381 (25 bp)	CGCAACCGTGCGATGCTGCAACACG	LOC_Os06g48240
OsAffx.28169.2.S1_at--1085--633	1	Chr06:29180368..29180392 (25 bp)	GATGCTGCAACACGCGCTAACCCTT	LOC_Os06g48240
OsAffx.28169.2.S1_at--477--61	1	Chr06:29180417..29180441 (25 bp)	ATGCGGCGGGAGACGATCAGCCTCT	LOC_Os06g48240
OsAffx.28169.2.S1_at--146--393	1	Chr06:29180420..29180444 (25 bp)	CGGCGGGAGACGATCAGCCTCTCCG	LOC_Os06g48240

Target Sequence

ACGCGGCCCAAGTCGGTCATCGTCGTCGAGGACGTCGACTGCTCCCTCGGACTGTTCGACCGGACGCGCGCGCCGGCGCC
GCCGTCGTCCCAAGACGACGCCGACGCCGACGCCGACGAGCAGCGCAACCGTGCGATGCTGCAACACGCGCTAACCCTTC
TGCCGCCGGCGGTCGAGGCGGCCATGCGGCGGGAGACGATCAGCCTCTCCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis