Browse Element(s) Details

Os.8227.1.A1_s_at

Description

gb:CR287767
DB_XREF= gi:44674333
DB_XREF=CR287767
CLONE=y605h05p3
TID=Os.8227.1
CNT=12
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8227 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49301 (A.thaliana) T49301 hypothetical protein T16L24.150 - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48230	11/11	RNA polymerase Rpb8 family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48190	OsAffx.27931.1.S1_at	11/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.5700.1.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48200	Os.22839.1.S2_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200	Os.22839.1.S1_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_s_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48220	NA	NA	6	+	29170336..29171172	hypothetical protein
LOC_Os06g48230	Os.52719.1.S1_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230	Os.8227.1.A1_s_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48240	OsAffx.28169.2.S1_at	11/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48240	OsAffx.25760.1.S1_x_at	1/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48250	OsAffx.28169.1.S1_at	11/11	6	+	29183400..29185123	ATPase, AAA family protein, expressed
LOC_Os06g48260	NA	NA	6	+	29186079..29186282	hypothetical protein
LOC_Os06g48270	OsAffx.29680.1.S1_at	4/11	6	+	29188145..29190042	hypothetical protein
LOC_Os06g48280	OsAffx.28171.1.S1_at	11/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48280	OsAffx.24197.1.S1_x_at	1/11	6	+	29192775..29193968	hypothetical protein
LOC_Os06g48290	OsAffx.15983.1.S1_at	10/11	6	+	29197272..29198358	Homeobox domain containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006350	biological_process	transcription
GO:0003899	molecular_function	DNA-directed RNA polymerase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8227.1.A1_s_at--1133--665	1	Chr06:29173861..29173885 (25 bp)	GTTGCTACTGAGGTCTATCCGATGC	LOC_Os06g48230
Os.8227.1.A1_s_at--559--1015	1	Chr06:29173846..29173870 (25 bp)	TATCCGATGCGTGCTGGTGACAGAT	LOC_Os06g48230
Os.8227.1.A1_s_at--709--81	1	Chr06:29173816..29173840 (25 bp)	ATGGTTTTAGCTCCTACTCTGAATC	LOC_Os06g48230
Os.8227.1.A1_s_at--530--373	1	Chr06:29173803..29173827 (25 bp)	CTACTCTGAATCTGGATGGAACTCC	LOC_Os06g48230
Os.8227.1.A1_s_at--1048--83	1	Chr06:29173788..29173812 (25 bp)	ATGGAACTCCGGACACTGGCTTCTA	LOC_Os06g48230
Os.8227.1.A1_s_at--722--195	1	Chr06:29173434..29173798 (25 bp)	ACTGGCTTCTACACGCAGGCTGGCA	LOC_Os06g48230
Os.8227.1.A1_s_at--513--835	1	Chr06:29173417..29173441 (25 bp)	GGCTGGCAGAAAAACACTTGCTGAC	LOC_Os06g48230
Os.8227.1.A1_s_at--567--561	1	Chr06:29173395..29173419 (25 bp)	GACAAGTTTGACTATGTCATGCATG	LOC_Os06g48230
Os.8227.1.A1_s_at--851--815	1	Chr06:29173371..29173395 (25 bp)	GGAAAGCTCTACAAGATCTCAGAAG	LOC_Os06g48230
Os.8227.1.A1_s_at--555--1025	1	Chr06:29172491..29172515 (25 bp)	TTTGGTGGCCTTCTGATGATGCTCA	LOC_Os06g48230
Os.8227.1.A1_s_at--1004--337	1	Chr06:29172343..29172367 (25 bp)	CAGCCTCTGATCTCCATTTGATGGT	LOC_Os06g48230

Target Sequence

GTTGCTACTGAGGTCTATCCGATGCGTGCTGGTGACAGATTCACCATGGTTTTAGCTCCTACTCTGAATCTGGATGGAAC
TCCGGACACTGGCTTCTACACGCAGGCTGGCAGAAAAACACTTGCTGACAAGTTTGACTATGTCATGCATGGAAAGCTCT
ACAAGATCTCAGAAGACAGTTCCAGTGGTCAAGCCACCAAAGTGGAGATCTATGCATCGTTTGGTGGCCTTCTGATGATG
CTCAAGGGTGACCCCTCCAGTGCCGCTAGCTTTGAGCTGGACCAGAGGCTGTTCCTCCTCATTCGAAAGGTGTAGATGCA
CTATCTACCTAATAACCTGTGATGATGGTTAACTTTCNGGCTATAGCCAGCCTCTGATCTCCATTTGATGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis