Browse Element(s) Details

OsAffx.28166.1.S1_s_at

Description

tigr:9634.m04707
TID=OsAffx.28166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DEAD-box protein abstrakt
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48210	11/11	ATP-dependent helicase DDX41, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48170	OsAffx.15981.1.S1_at	11/11	6	+	29136090..29138508	Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48180	Os.27205.1.S1_at	11/11	6	+	29143890..29145563	Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48190	OsAffx.27931.1.S1_at	11/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.5700.1.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48200	Os.22839.1.S2_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200	Os.22839.1.S1_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_s_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48220	NA	NA	6	+	29170336..29171172	hypothetical protein
LOC_Os06g48230	Os.52719.1.S1_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230	Os.8227.1.A1_s_at	11/11	6	+	29172200..29174610	RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48240	OsAffx.28169.2.S1_at	11/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48240	OsAffx.25760.1.S1_x_at	1/11	6	+	29179298..29180824	ATPase, AAA family protein, expressed
LOC_Os06g48250	OsAffx.28169.1.S1_at	11/11	6	+	29183400..29185123	ATPase, AAA family protein, expressed
LOC_Os06g48260	NA	NA	6	+	29186079..29186282	hypothetical protein
LOC_Os06g48270	OsAffx.29680.1.S1_at	4/11	6	+	29188145..29190042	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008026	molecular_function	ATP-dependent helicase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28166.1.S1_s_at--167--999	1	Chr06:29165379..29165403 (25 bp)	TACCACCAATTCTGGCTGATCTTGA	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--341--647	1	Chr06:29165420..29165444 (25 bp)	GATAAGGTGGCCATTGCTCAGCAGA	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--1078--753	1	Chr06:29165472..29165496 (25 bp)	GTGGCCTTGGCCATCGTATCGAGGC	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--895--505	1	Chr06:29165506..29165530 (25 bp)	GCAGCAGCTCCAGAACAGTGTCACG	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--788--249	1	Chr06:29165519..29165543 (25 bp)	AACAGTGTCACGCTTGCTCGAGCAA	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--920--689	1	Chr06:29165595..29165619 (25 bp)	GTATCACTAGATTTGCTCTGCCATG	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--326--853	1	Chr06:29165642..29165666 (25 bp)	TGGACCAATGGTTCAGTTTACTGTA	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--728--357	1	Chr06:29165667..29165691 (25 bp)	CATATGTGAAGTTGTACCTGCTCTA	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--459--491	1	Chr06:29165717..29165741 (25 bp)	GCTTCTGACTGTATTTCTAACCGGC	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--860--15	1	Chr06:29165729..29165753 (25 bp)	ATTTCTAACCGGCAGCTTTACATCG	LOC_Os06g48210
OsAffx.28166.1.S1_s_at--441--455	1	Chr06:29165753..29165777 (25 bp)	GCCCATCTTCTGACCTGTGTTTGAA	LOC_Os06g48210

Target Sequence

TACCACCAATTCTGGCTGATCTTGATGATCCACAGGAGGACGATAAGGTGGCCATTGCTCAGCAGAGTGGTGTGAAGGGC
TGTGCGTTTTGTGGTGGCCTTGGCCATCGTATCGAGGCCTGCCCCAAGCAGCAGCTCCAGAACAGTGTCACGCTTGCTCG
AGCAAGAAGTGATTACTTCGGTGGTGGTGGCTACCGGGGGGAGATTTGATCATCAAGTATCACTAGATTTGCTCTGCCAT
GTATGTAGTACAGCCATCTACAATGGACCAATGGTTCAGTTTACTGTACATATGTGAAGTTGTACCTGCTCTAATAAATT
GTCTGTACAAAATTACTAGCTTCTGACTGTATTTCTAACCGGCAGCTTTACATCGCCCATCTTCTGACCTGTGTTTGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis