Browse Element(s) Details

Os.27205.1.S1_at

Description

gb:AK105934.1
DB_XREF= gi:32991143
TID=Os.27205.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full insert sequence.
FL= gb:AK105934.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48180	11/11	Brassinosteroid-regulated protein BRU1 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48130	OsAffx.22896.1.S1_x_at	1/11	6	+	29118043..29119856	retrotransposon protein, putative, unclassified
LOC_Os06g48140	NA	NA	6	+	29120168..29123346	hypothetical protein
LOC_Os06g48150	NA	NA	6	+	29125049..29125381	hypothetical protein
LOC_Os06g48160	Os.28030.1.S1_at	11/11	6	+	29132108..29133573	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160	Os.28030.1.S1_s_at	11/11	6	+	29132108..29133573	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160	Os.28030.2.A1_at	11/11	6	+	29132108..29133573	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48170	OsAffx.15981.1.S1_at	11/11	6	+	29136090..29138508	Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48180	Os.27205.1.S1_at	11/11	6	+	29143890..29145563	Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48190	OsAffx.27931.1.S1_at	11/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.5700.1.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48200	Os.22839.1.S2_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200	Os.22839.1.S1_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48210	OsAffx.28166.1.S1_s_at	11/11	6	+	29162810..29165835	ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48220	NA	NA	6	+	29170336..29171172	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0007568	biological_process	aging
GO:0009664	biological_process	cell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009740	biological_process	gibberellic acid mediated signaling
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0005618	cellular_component	cell wall
GO:0005737	cellular_component	cytoplasm
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27205.1.S1_at--165--327	1	Chr06:29144530..29144998 (25 bp)	CACATCCTTTTCTACGTGGACGGGA	LOC_Os06g48180
Os.27205.1.S1_at--845--181	1	Chr06:29144998..29145022 (25 bp)	ACGCCGATACGGGAGTACAGGAACA	LOC_Os06g48180
Os.27205.1.S1_at--997--1049	1	Chr06:29145148..29145172 (25 bp)	TTCACGGCGTCGTACCGCGGGCTCG	LOC_Os06g48180
Os.27205.1.S1_at--5--765	1	Chr06:29145220..29145244 (25 bp)	GGGAGCCCGTGGATGTACCAGCAGC	LOC_Os06g48180
Os.27205.1.S1_at--887--927	1	Chr06:29145272..29145296 (25 bp)	TCCGGCAGGTGCAGAGGGACTACAT	LOC_Os06g48180
Os.27205.1.S1_at--437--885	1	Chr06:29145296..29145320 (25 bp)	TGATCTACAATTACTGCGCCGACAC	LOC_Os06g48180
Os.27205.1.S1_at--636--3	1	Chr06:29145305..29145329 (25 bp)	ATTACTGCGCCGACACGTACCGGTT	LOC_Os06g48180
Os.27205.1.S1_at--472--757	1	Chr06:29145337..29145361 (25 bp)	GGGTTACCGCCGGAGTGCACTGCCA	LOC_Os06g48180
Os.27205.1.S1_at--653--611	1	Chr06:29145349..29145373 (25 bp)	GAGTGCACTGCCAAGTAGGAAAAAA	LOC_Os06g48180
Os.27205.1.S1_at--824--7	1	Chr06:29145419..29145443 (25 bp)	ATTGCTGTATGTGTTATTGTCGTGT	LOC_Os06g48180
Os.27205.1.S1_at--472--115	1	Chr06:29145488..29145512 (25 bp)	AGTCGACGACGATGGATGTATAATA	LOC_Os06g48180

Target Sequence

CACATCCTTTTCTACGTGGACGGGACGCCGATACGGGAGTACAGGAACACGGAGGCGACGACGGGGGTGGCGTTCCCGCG
GGCGCAGGCGATGCGGGTGTACGCGAGCCTGTGGGACGCGGAGGAGTGGGCGACGCANGGGGGGCGCGTGAGGACGGACT
GNGTCGCGGGCGCCGTTCACGGCGTCGTACCGCGGGCTCGCCGCGAGCGGGTGCACGTCGCAGGACGCCACGGCGTGCGC
CAACCCGGGGAGCCCGTGGATGTACCAGCAGCAGCTGGACAGCGCNGTCGCAGGACCGGCTCCGGCAGGTGCAGAGGGAC
TACATGATCTACAATTACTGCGCCGACACGTACCGGTTCCCCCAGGGGTTACCGCCGGAGTGCACTGCCAAGTAGGAAAA
AAAAAGGGGCACTTGAAACTATTTTATTGTAGAATTATTCTGTATCTATTGCTGTATGTGTTATTGTCGTGTAAAAAGTA
GTAGAGAGATGGGAAAAGGATACGAGGAAGATAATAAGTCGACGACGATGGATGTATAATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis