Browse Element(s) Details

Os.28030.1.S1_at

Description

gb:AK104912.1
DB_XREF= gi:32990121
TID=Os.28030.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence.
FL= gb:AK066125.1 gb:AK104912.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48160	11/11	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48110	NA	NA	6	+	29110104..29114618	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48120	NA	NA	6	+	29114873..29116854	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48130	OsAffx.22896.1.S1_x_at	1/11	6	+	29118043..29119856	retrotransposon protein, putative, unclassified
LOC_Os06g48140	NA	NA	6	+	29120168..29123346	hypothetical protein
LOC_Os06g48150	NA	NA	6	+	29125049..29125381	hypothetical protein
LOC_Os06g48160	Os.28030.1.S1_at	11/11	6	+	29132108..29133573	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160	Os.28030.1.S1_s_at	11/11	6	+	29132108..29133573	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160	Os.28030.2.A1_at	11/11	6	+	29132108..29133573	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48170	OsAffx.15981.1.S1_at	11/11	6	+	29136090..29138508	Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48180	Os.27205.1.S1_at	11/11	6	+	29143890..29145563	Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48190	OsAffx.27931.1.S1_at	11/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.5700.1.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_x_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48190	OsAffx.27931.2.S1_at	1/11	6	+	29146381..29147624	expressed protein
LOC_Os06g48200	Os.22839.1.S2_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200	Os.22839.1.S1_at	11/11	6	+	29155430..29156885	xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009664	biological_process	cell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0005618	cellular_component	cell wall
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.28030.1.S1_at--123--423	1	Chr06:29133115..29133139 (25 bp)	CCGACGCCTGCGTCTGGTCGAACGG	LOC_Os06g48160
Os.28030.1.S1_at--956--165	1	Chr06:29133145..29133169 (25 bp)	AGCGCTGCCCCGTCGGCACAATGGA	LOC_Os06g48160
Os.28030.1.S1_at--1139--911	1	Chr06:29133150..29133174 (25 bp)	TGCCCCGTCGGCACAATGGAGACCG	LOC_Os06g48160
Os.28030.1.S1_at--238--719	1	Chr06:29133156..29133180 (25 bp)	GTCGGCACAATGGAGACCGTCGCAG	LOC_Os06g48160
Os.28030.1.S1_at--1160--823	1	Chr06:29133159..29133183 (25 bp)	GGCACAATGGAGACCGTCGCAGCGC	LOC_Os06g48160
Os.28030.1.S1_at--473--223	1	Chr06:29133162..29133186 (25 bp)	ACAATGGAGACCGTCGCAGCGCCGG	LOC_Os06g48160
Os.28030.1.S1_at--285--321	1	Chr06:29133163..29133187 (25 bp)	CAATGGAGACCGTCGCAGCGCCGGC	LOC_Os06g48160
Os.28030.1.S1_at--248--863	1	Chr06:29133216..29133240 (25 bp)	TGGTGGAACCAGGAGCTCAGCGACA	LOC_Os06g48160
Os.28030.1.S1_at--545--773	1	Chr06:29133217..29133241 (25 bp)	GGTGGAACCAGGAGCTCAGCGACAT	LOC_Os06g48160
Os.28030.1.S1_at--967--851	1	Chr06:29133219..29133243 (25 bp)	TGGAACCAGGAGCTCAGCGACATGA	LOC_Os06g48160
Os.28030.1.S1_at--546--97	1	Chr06:29133226..29133250 (25 bp)	AGGAGCTCAGCGACATGAGCTACCG	LOC_Os06g48160

Target Sequence

CCGACGCCTGCGTCTGGTCGAACGGCGCGCAGCGCTGCCCCGTCGGCACAATGGAGACCGTCGCAGCGCCGGCCGGCGGC
AGGAGGGGCGGCGCCGGCGGGTGGTGGAACCAGGAGCTCAGCGACATGAGCTACCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis